YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.98
Transmembrane Helix	60	81	0.92
Non-Cytoplasmic	82	114	0.92
Transmembrane Helix	115	134	0.95
Cytoplasmic	135	143	0.79
Transmembrane Helix	144	164	0.95
Non-Cytoplasmic	165	170	0.88
Transmembrane Helix	171	192	0.94
Cytoplasmic	193	203	0.81
Transmembrane Helix	204	224	0.90
Non-Cytoplasmic	225	234	0.85
Transmembrane Helix	235	256	0.89
Cytoplasmic	257	327	0.91
Transmembrane Helix	328	344	0.58
Non-Cytoplasmic	345	361	0.56
Transmembrane Helix	362	381	0.82
Cytoplasmic	382	388	0.91
Transmembrane Helix	389	410	0.91
Non-Cytoplasmic	411	428	0.88
Transmembrane Helix	429	452	0.90
Cytoplasmic	453	463	0.92
Transmembrane Helix	464	486	0.85
Non-Cytoplasmic	487	491	0.76
Transmembrane Helix	492	512	0.92
Cytoplasmic	513	570	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTPDLISP QKSNSSNSYE LESGRSKAMN TPEGKNESFH DNLSESQVQP AVAPPNTGKG  60
   61 VYVTVSICCV MVAFGGFIFG WDTGTISGFV AQTDFLRRFG MKHHDGSHYL SKVRTGLIVS 120
  121 IFNIGCAIGG IVLAKLGDMY GRRIGLIVVV VIYTIGIIIQ IASINKWYQY FIGRIISGLG 180
  181 VGGITVLSPM LISEVAPSEM RGTLVSCYQV MITLGIFLGY CTNFGTKNYS NSVQWRVPLG 240
  241 LCFAWALFMI GGMMFVPESP RYLVEAGRID EARASLAKVN KCPPDHPYIQ YELETIEASV 300
  301 EEMRAAGTAS WGELFTGKPA MFQRTMMGIM IQSLQQLTGD NYFFYYGTIV FQAVGLSDSF 360
  361 ETSIVFGVVN FFSTCCSLYT VDRFGRRNCL MWGAVGMVCC YVVYASVGVT RLWPNGQDQP 420
  421 SSKGAGNCMI VFACFYIFCF ATTWAPIAYV VISECFPLRV KSKCMSIASA ANWIWGFLIS 480
  481 FFTPFITGAI NFYYGYVFMG CMVFAYFYVF FFVPETKGLS LEEVNDMYAE GVLPWKSASW 540
  541 VPVSKRGADY NADDLMHDDQ PFYKSLFSRK