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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: YHR080C
Protein type: Transmembrane
Type Confidence: 0.56
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRDSKKKHH WGTAFLRTIG VKRKHKKDRN FLNNTTGENV STTASAERFR RVGGNPDIPS  60
   61 LLKPETFTES PAKGSQKAAA SSLAHSQGVF NIPIVIDPME TNRLEKTNTN LTAGSLKGRF 120
  121 QDGNSNSNSV PSLSVQALEK EKLQSGKREG SSNQAEEKTP DGHDEHTAFE TFLSFAHNAV 180
  181 SHIPKINVQD ADNGTISRNE PKDRKKNSSN ISGALSENST NNKNTSSTKE SDGPFLKNLD 240
  241 NILAASKSST PSNQQLNTTE AGSKSKPSSL SRLAFGNLKG HIHSNSHSSS NAISGDDTSL 300
  301 DDTRKMTDDM ARKVVFEPIR HSHDKPTPGV GNLKLEHFDD SQATLEGLEA MSAESLPEAD 360
  361 HLDSRGPVQQ SNLERKTVPS KWSVVSSSTT DGVKPRRRAK SMISAMADKQ NTSSDVLQDC 420
  421 KKRLSFNSSN GLTNNDPEYE DREPREMSKK FLNRRSFSPG SISMGMKVLP STALKYSLNK 480
  481 VKNSTDIAST IIPRPSMSNG RPSSGLRRSS SKSFSSTPVN IIEPSEENGR QSSIRIKGVE 540
  541 YASEKKDAEF HAIFKDSGVS PNERLILDHS CALSRDILLQ GRMYISDQHI GFYSNILGWV 600
  601 STVFIPFKTI VQIEKRATAG IFPNGIVIDT LHTKYTFASF TSRDATYDLI TEVWNQIILG 660
  661 KRFRSNSNNT NSSSNSISDD ENDDYDDDYD DYGDDDDDLY DNSNNISDST DMTSSVSIGK 720
  721 PEDLPMPLQT DTPYGTGIPP LGPKIHSPTE TVYKPAPNEK LVNESTIHAS LGRVVNILFG 780
  781 KDVSYIMAIL KAQKNSDISP IPVLVDSPTV SEGKKRDYSY VKTTPGAIGP GKTKCMITET 840
  841 IQHFNLEEYV QVLQTTKTPD VPSGNSFYVR TVYLLSWANN NETKLKLYVS VEWTGKSLIK 900
  901 SPIEKGTFDG VTDATKILVE ELGNILTRSA TKRKRSSKEN TVTVSTLPKM EPSSHAPTEP 960
  961 DIQKDKDDSI IRENENIPAP LGTVVQLLFG SNTEYMQKVI TRDKNNVNVE TIPKFTPSLV1020
 1021 EGGSRHYEYT KKLNNSIGPK QTKCLLTESI EHMDINNYVL VTQTTKTPDV PSGSNFAVES1080
 1081 KIFLFWGQHD TTNMTVITKI NWTSKSFLKG AIEKGSVEGQ KVSVDYMLSE LRDIISRAKS1140
 1141 KKPVKKVMKS HDKHRPFHSK VEQKSSESRK SDDNKDILTH ILDFVQNNFS SEIFMNKLLS1200
 1201 PQKLFLILGL TIMLFWSPRL HVFQEKNNLQ IIKPGRLLID GQEYNYVPSF GTLYNSYENA1260
 1261 ISSKKKRENV NYARDKSPIV GRESDIWDWI SNRGSAISPR GRAMLRNDDE HKLQQLSESI1320
 1321 KITEMQLNHM KTMLDNIERD ANDLS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle