YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHR078W
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALIVFIVL SVSGAFAYKC SYERLWFKVG SLFDIISTSS KKNVIPLASK MEVGSNEDVS  60
   61 SMGNFINKFY TEYSLPSHKV LQSLRVLFSL AMMTYTVTIE IILWQIKVAG MDKEVTFITT 120
  121 WVWPLTAIML SFILILFQPF FIIISLLNKF YNDKFDIDRL IIVTCIILST LIALLSYINI 180
  181 GPFQYTKNIL TRLSIGGVTV MASLSGLATV SSLYYNFLVI WHKFRNTPMS DPSFRNINNS 240
  241 NNNSKSLLWT TDAYIEEKIQ DYEHNIEQNV QILRSLEEEV GENSTFKAEL MEKIAWYQLE 300
  301 LGKLEALLQQ SPQVRTFKKA FEVGFIIYCL HKLIITFLKR IPYIIYHSLK YPDDYDYENF 360
  361 SENAASDPLA ITIANILDFS FFRFNYQHDL DSLTKQISLF LSISLFLCCL SAVNTTISYV 420
  421 VTLLPIKFQI LALFAMQNDD TANVLPEYTN NSSYKGKKRN YSQEQKGISL IKNLVVSELT 480
  481 GVYVLATTLM VRSHLPFEVS QRLKELLGGK FTVPNIVIDS WFDEVYAFAC VFTFICIRIA 540
  541 ERKLSTKKVS VE

Type	Start	End	Confidence
Cytoplasmic	1	83	0.69
Transmembrane Helix	84	106	0.81
Non-Cytoplasmic	107	121	0.73
Transmembrane Helix	122	147	0.83
Cytoplasmic	148	159	0.68
Transmembrane Helix	160	180	0.94
Non-Cytoplasmic	181	194	0.69
Transmembrane Helix	195	218	0.86
Cytoplasmic	219	398	0.71
Transmembrane Helix	399	423	0.78
Non-Cytoplasmic	424	521	0.69
Transmembrane Helix	522	540	0.57
Cytoplasmic	541	552	0.70