YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YHR032W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	171	0.94
Transmembrane Helix	172	193	0.84
Non-Cytoplasmic	194	209	0.74
Transmembrane Helix	210	231	0.78
Cytoplasmic	232	243	0.73
Transmembrane Helix	244	266	0.90
Non-Cytoplasmic	267	283	0.82
Transmembrane Helix	284	302	0.86
Cytoplasmic	303	312	0.79
Transmembrane Helix	313	336	0.87
Non-Cytoplasmic	337	345	0.82
Transmembrane Helix	346	369	0.88
Cytoplasmic	370	399	0.92
Transmembrane Helix	400	422	0.80
Non-Cytoplasmic	423	429	0.74
Transmembrane Helix	430	452	0.70
Cytoplasmic	453	470	0.62
Transmembrane Helix	471	492	0.72
Non-Cytoplasmic	493	518	0.64
Transmembrane Helix	519	537	0.46
Cytoplasmic	538	581	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQFSHTTN DRRSSIIYST SVGKAGLFTP ADYIPQESEE NLIEGEEQEG SEEEPSYTGN  60
   61 DDETEREGEY HSLLDANNSR TLQQEAWQQG YDSHDRKRLL DEERDLLIDN KLLSQHGNGG 120
  121 GDIESHGHGQ AIGPDEEERP AEIANTWESA IESGQKISTT FKRETQVITM NALPLIFTFI 180
  181 LQNSLSLASI FSVSHLGTKE LGGVTLGSMT ANITGLAAIQ GLCTCLDTLC AQAYGAKNYH 240
  241 LVGVLVQRCA VITILAFLPM MYVWFVWSEK ILALMIPERE LCALAANYLR VTAFGVPGFI 300
  301 LFECGKRFLQ CQGIFHASTI VLFVCAPLNA LMNYLLVWND KIGIGYLGAP LSVVINYWLM 360
  361 TLGLLIYAMT TKHKERPLKC WNGIIPKEQA FKNWRKMINL AIPGVVMVEA EFLGFEVLTI 420
  421 FASHLGTDAL GAQSIVATIA SLAYQVPFSI SVSTSTRVAN FIGASLYDSC MITCRVSLLL 480
  481 SFVCSSMNMF VICRYKEQIA SLFSTESAVV KMVVDTLPLL AFMQLFDAFN ASTAGCLRGQ 540
  541 GRQKNRWVHQ PSRILLPRCA HGICVSIPVS SGCRRLMVGY N