YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARN1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.98
Transmembrane Helix	71	90	0.94
Non-Cytoplasmic	91	109	0.91
Transmembrane Helix	110	130	0.92
Cytoplasmic	131	139	0.77
Transmembrane Helix	140	160	0.92
Non-Cytoplasmic	161	166	0.87
Transmembrane Helix	167	188	0.91
Cytoplasmic	189	197	0.81
Transmembrane Helix	198	216	0.92
Non-Cytoplasmic	217	232	0.82
Transmembrane Helix	233	253	0.92
Cytoplasmic	254	285	0.96
Transmembrane Helix	286	311	0.87
Non-Cytoplasmic	312	322	0.84
Transmembrane Helix	323	340	0.97
Cytoplasmic	341	358	0.88
Transmembrane Helix	359	378	0.93
Non-Cytoplasmic	379	398	0.85
Transmembrane Helix	399	418	0.94
Cytoplasmic	419	426	0.81
Transmembrane Helix	427	445	0.97
Non-Cytoplasmic	446	453	0.77
Transmembrane Helix	454	475	0.89
Cytoplasmic	476	493	0.86
Transmembrane Helix	494	514	0.79
Non-Cytoplasmic	515	563	0.74
Transmembrane Helix	564	583	0.57
Cytoplasmic	584	627	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESVHSRDPV KEEKKHVFMG MEHELNPETH NDSNSDSYGL PQLSEKYNAL RQNRSLIIQQ  60
   61 TEIIGSAYNK WYLQAILLLS AFICGYGYGL DGNIRYIYTG YATSSYSEHS LLSTINVINA 120
  121 VVSAASQIIY ARLSDVFGRL YLFISAVILY VVGTIIQSQA YDVQRYAAGA IFYNAGYVGV 180
  181 ILILLIILSD FSSLKWRLLY QFVPTWPFII NTWIAGNITS RANPVVNWSW DVGMWAFIFP 240
  241 LSCVPIVLCM LHMQWRARKT PEWHALKGQK SYYQEHGFIK ILKQLFWMLD VVGVLLMGCS 300
  301 LGCILVPLTL AGGVKTTWND SRLIGPFVLG FVLIPILWIW EYRFARDPIL PYRLVKDRAV 360
  361 WSSMGISFLI DFIYYMAADY LYTVMIVAVN ESVKSATRIA TLSSFVSTVA SPFFALLVTR 420
  421 CTRLKPFIMF GCALWMVAMG LLYHFRGGSQ SHSGIIGALC VWGVGTTLFT YPVTVSVQSA 480
  481 VSHENMATVT ALNYTLYRIG SAVGSAVSGA IWTQTLYKQI LKRMGDVALA TTAYESPYTF 540
  541 IETYTWGTPQ RNALMNAYKY VQRLETIVAL VFCVPLIAFS LCLRDPKLTD TVAVEYIEDG 600
  601 EYVDTKDNDP ILDWFEKLPS KFTFKRE