YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VMR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.85
Transmembrane Helix	28	47	0.88
Cytoplasmic	48	142	0.86
Transmembrane Helix	143	161	0.65
Non-Cytoplasmic	162	169	0.63
Transmembrane Helix	170	189	0.84
Cytoplasmic	190	194	0.70
Transmembrane Helix	195	214	0.78
Non-Cytoplasmic	215	228	0.58
Transmembrane Helix	229	244	0.32
Cytoplasmic	245	335	0.61
Transmembrane Helix	336	358	0.85
Non-Cytoplasmic	359	377	0.67
Transmembrane Helix	378	397	0.86
Cytoplasmic	398	462	0.81
Transmembrane Helix	463	484	0.89
Non-Cytoplasmic	485	490	0.68
Transmembrane Helix	491	512	0.89
Cytoplasmic	513	568	0.97
Transmembrane Helix	569	593	0.85
Non-Cytoplasmic	594	600	0.78
Transmembrane Helix	601	620	0.74
Cytoplasmic	621	974	0.92
Transmembrane Helix	975	996	0.86
Non-Cytoplasmic	997	1040	0.89
Transmembrane Helix	1041	1063	0.87
Cytoplasmic	1064	1113	0.92
Transmembrane Helix	1114	1135	0.86
Non-Cytoplasmic	1136	1140	0.72
Transmembrane Helix	1141	1161	0.91
Cytoplasmic	1162	1226	0.88
Transmembrane Helix	1227	1249	0.86
Non-Cytoplasmic	1250	1254	0.70
Transmembrane Helix	1255	1276	0.85
Cytoplasmic	1277	1592	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTDPLIIRN NGSFWEVDDF TRLGRTQLLS YYLPLAIIAS IGIFALCRSG LSRYVRSAEC  60
   61 DLVNEYLFGA QEERKEDNSI ERLLRNSNTQ ANYVNVKKQG RILKLRHFDI TTIDVKQIDA 120
  121 KNHGGLTFSR PSTSDHLRKS SEIVLMSLQI IGLSFLRVTK INIELTNRDV TTLLLFWLIL 180
  181 LSLSILRVYK RSTNLWAICF TAHTTIWIST WIPIRSVYIG NIDDVPSQIF YIFEFVITST 240
  241 LQPIKLTSPI KDNSSIIYVR DDHTSPSREH ISSILSCITW SWITNFIWEA QKNTIKLKDI 300
  301 WGLSMEDYSI FILKGFTRRN KHINNLTLAL FESFKTYLLI GMLWVLVNSI VNLLPTILMK 360
  361 RFLEIVDNPN RSSSCMNLAW LYIIGMFICR LTLAICNSQG QFVSDKICLR IRAILIGEIY 420
  421 AKGLRRRLFT SPKTSSDSDS ISANLGTIIN LISIDSFKVS ELANYLYVTV QAVIMIIVVV 480
  481 GLLFNFLGVS AFAGISIILV MFPLNFLLAN LLGKFQKQTL KCTDQRISKL NECLQNIRIV 540
  541 KYFAWERNII NEIKSIRQKE LRSLLKKSLV WSVTSFLWFV TPTLVTGVTF AICTFVQHED 600
  601 LNAPLAFTTL SLFTLLKTPL DQLSNMLSFI NQSKVSLKRI SDFLRMDDTE KYNQLTISPD 660
  661 KNKIEFKNAT LTWNENDSDM NAFKLCGLNI KFQIGKLNLI LGSTGSGKSA LLLGLLGELN 720
  721 LISGSIIVPS LEPKHDLIPD CEGLTNSFAY CSQSAWLLND TVKNNIIFDN FYNEDRYNKV 780
  781 IDACGLKRDL EILPAGDLTE IGEKGITLSG GQKQRISLAR AVYSSAKHVL LDDCLSAVDS 840
  841 HTAVWIYENC ITGPLMKNRT CILVTHNVSL TLRNAHFAIV LENGKVKNQG TITELQSKGL 900
  901 FKEKYVQLSS RDSINEKNAN RLKAPRKNDS QKIEPVTENI NFDANFVNDG QLIEEEEKSN 960
  961 GAISPDVYKW YLKFFGGFKA LTALFALYIT AQILFISQSW WIRHWVNDTN VRINAPGFAM1020
 1021 DTLPLKGMTD SSKNKHNAFY YLTVYFLIGI IQAMLGGFKT MMTFLSGMRA SRKIFNNLLD1080
 1081 LVLHAQIRFF DVTPVGRIMN RFSKDIEGVD QELIPYLEVT IFCLIQCASI IFLITVITPR1140
 1141 FLTVAVIVFV LYFFVGKWYL TASRELKRLD SITKSPIFQH FSETLVGVCT IRAFGDERRF1200
 1201 ILENMNKIDQ NNRAFFYLSV TVKWFSFRVD MIGAFIVLAS GSFILLNIAN IDSGLAGISL1260
 1261 TYAILFTDGA LWLVRLYSTF EMNMNSVERL KEYSSIEQEN YLGHDEGRIL LLNEPSWPKD1320
 1321 GEIEIENLSL RYAPNLPPVI RNVSFKVDPQ SKIGIVGRTG AGKSTIITAL FRLLEPITGC1380
 1381 IKIDGQDISK IDLVTLRRSI TIIPQDPILF AGTIKSNVDP YDEYDEKKIF KALSQVNLIS1440
 1441 SHEFEEVLNS EERFNSTHNK FLNLHTEIAE GGLNLSQGER QLLFIARSLL REPKIILLDE1500
 1501 ATSSIDYDSD HLIQGIIRSE FNKSTILTIA HRLRSVIDYD RIIVMDAGEV KEYDRPSELL1560
 1561 KDERGIFYSM CRDSGGLELL KQIAKQSSKM MK