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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CYAA_DICDI
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSPMFND HAIARSKYAL NSVLQQTNEL HDGNGGGGYT PSSPHLGGVS LNKSQNQPYT  60
   61 QYNNGGGGGG GGGGHINPMH LNLNSITNNH NNHHNHHPNT LSTPHNNNHN NNNHSTSHHP 120
  121 HSNSVANGGH LSQSITQQRG GLADLANAVI NRKNRSDSVQ TKMKPTDSAS NIESWAKVEK 180
  181 FSSSIFDSEK SKKSNIFQKY TLRLKNSYEK GYLHQHYNSQ IMLLRITNLI GIVAVSYGFT 240
  241 KEAIFMLIAI RILCFNLFAF SIFLSFLRNR ELYKKLFHPL FLFSFTTFFI TILLEYKTTT 300
  301 TTLILFLYVV IFCCLYALGC LLFIWMVMCN LMNAICFIIF IFLESTLDRN NLISFVIYIL 360
  361 TMFLVGASHL YVLEKFRKES FIAEKKLIKE SNILKNEKEK SSKLLNNILP DFIIENIVYD 420
  421 FEKRDIVIPE PEEYKSCSIL CFDIVQFTNM SAKLDSPSRL VDLLTQVFRE FDTVVLRNGC 480
  481 QKIKTDGDAY ICACGLKSKK KAKKQMPNSK STPLLQSTSS TSVNNIDLDK DNKDNNNNNN 540
  541 NNKNSNNNFK NKNNIINNNN NSNSNNNNNN NSNNNNINNS GNDDDDEEIE DSELEHFEKL 600
  601 IDVAIEIMNL DVLKETGNTE GIQVQFRCGI AAGSVYGGVI GSQKYQFDIW GDTIARSHTL 660
  661 EQLGQPGKVH VGETIMTHKN WLKKWQYNYN IVSNSECKDQ EHDYEFHKAH GECITSYFVD 720
  721 WKDDYREKKK KDLSCDFSIN KVLNAETIES KSNNNNYNNN NYNNNNYNNN YNNNNLNNNS 780
  781 NNNNNEYGSS SSSSSVLGEA VTEQIDCNNT NPPLQHKKSQ SILTNNENDI VSPSLTSNSP 840
  841 ILDTTVNNNN NNNNTNNNNK NQNNIYGNNN NNEEDFKIKS KSNSSFEIEM SNIKKPKSRF 900
  901 IDRVMGILHH VKISNDKIDK EIIQIDEDFV KVTKLRKYFL FFENLTTEKF FHKYVIINNV 960
  961 VETKFFLVIG LILHLMFYLD DHIMDSAPYF NSNVIYLVMG IAFLVYIGLS FTRIFRTPLV1020
 1021 YQIAFFILLC AFGVCTVLEL IRFQNPLARS SLTRVCATLF YLNVFHSLNF LSVLFLNLFI1080
 1081 FSFFIICSIL ISPTLTNHLY ETDYIGFVIV LLIQICSSYG MKLAMRKAWV VNCKINFKTI1140
 1141 SVNKEKDKFN FLLKSIFPQS ALTKLRDMID TPNIETKGIV YVQPHQDVSI MFIQIAGFQE1200
 1201 YDEPKDLIKK LNDIFSFFDG LLNQKYGGTV EKIKTIGNTY MAVSGLDGSP SFLEKMSDFA1260
 1261 LDVKAYTNSV AISRVVRIGI SHGPLVAGCI GISRAKFDVW GDTANTASRM QSNAQDNEIM1320
 1321 VTHSVYERLN KLFYFDDEKE ILVKGKGKMV THVLKGKKDL EQTNKWFTKP PEVWEVNATP1380
 1381 AGIASPLSGT LLGEIGSFTT PRFHLSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle