YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCH1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	317	0.57
Transmembrane Helix	318	335	0.52
Cytoplasmic	336	345	0.85
Transmembrane Helix	346	366	0.89
Non-Cytoplasmic	367	382	0.89
Transmembrane Helix	383	403	0.90
Cytoplasmic	404	496	0.94
Transmembrane Helix	497	513	0.61
Non-Cytoplasmic	514	556	0.57
Transmembrane Helix	557	581	0.78
Cytoplasmic	582	687	0.67
Transmembrane Helix	688	710	0.91
Non-Cytoplasmic	711	766	0.72
Transmembrane Helix	767	786	0.86
Cytoplasmic	787	807	0.74
Transmembrane Helix	808	826	0.62
Non-Cytoplasmic	827	840	0.49
Transmembrane Helix	841	866	0.83
Cytoplasmic	867	895	0.60
Transmembrane Helix	896	920	0.84
Non-Cytoplasmic	921	936	0.67
Transmembrane Helix	937	956	0.68
Cytoplasmic	957	971	0.44
Transmembrane Helix	972	996	0.83
Non-Cytoplasmic	997	1206	0.57
Transmembrane Helix	1207	1229	0.94
Cytoplasmic	1230	1237	0.52
Transmembrane Helix	1238	1259	0.79
Non-Cytoplasmic	1260	1277	0.51
Transmembrane Helix	1278	1297	0.91
Cytoplasmic	1298	1312	0.47
Transmembrane Helix	1313	1327	0.28
Non-Cytoplasmic	1328	1339	0.61
Transmembrane Helix	1340	1361	0.80
Cytoplasmic	1362	1401	0.79
Transmembrane Helix	1402	1421	0.73
Non-Cytoplasmic	1422	1449	0.77
Transmembrane Helix	1450	1472	0.85
Cytoplasmic	1473	1529	0.95
Transmembrane Helix	1530	1549	0.90
Non-Cytoplasmic	1550	1556	0.83
Transmembrane Helix	1557	1579	0.83
Cytoplasmic	1580	1594	0.86
Transmembrane Helix	1595	1614	0.93
Non-Cytoplasmic	1615	1620	0.69
Transmembrane Helix	1621	1640	0.78
Cytoplasmic	1641	1656	0.68
Transmembrane Helix	1657	1675	0.90
Non-Cytoplasmic	1676	1752	0.86
Transmembrane Helix	1753	1774	0.91
Cytoplasmic	1775	2039	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGRKRTLTE PFEPNTNPFG DNAAVMTENV EDNSETDGNR LESKPQALVP PALNIVPPES  60
   61 SIHSTEEKKG DEYNGNDKDS SLISNIFRTR VGRSSHENLS RPKLSLKTAS FGAAESSRRN 120
  121 VSPSTKSAKS SSQYIDLNDE RLRRRSFSSY SRSSSRRVSN SPSSTDRPPR SAKVLSLIAA 180
  181 DDMDDFEDLQ KGFKSAIDEE GLTWLPQLKS EKSRPVSDVG EDRGEGEQES IPDVHTPNVG 240
  241 ASATPGSIHL TPEPAQNGSV SEGLEGSINN SRKKPSPKFF HHLSPQKEDK DQTEVIEYAE 300
  301 DILDFETLQR KLESRPFVLY GHSLGVFSPT NPLRIKIARF LLHRRYSLLY NTLLTFYAIL 360
  361 LAIRTYNPHN VVFLYRFSNW TDYFIFILSA CFTGNDIAKI IAFGFWDDSE MFKAYGREYK 420
  421 SILQRSGIMK LYIYLREKYG RKLIDFIIPF RIISPGEETK YQRSSLSTSL TKPYGAKENQ 480
  481 RPFGTPRAFA RSSWNRIDLV SSVSFWLGMF LSIKSYDTKT GIRIFKPLAI LRILRLVNVD 540
  541 TGMPSILRGL KYGIPQLVNV SSMLVYFWIF FGILGVQIFQ GSFRRQCVWF NPEDPTDTYQ 600
  601 YDMQFCGGYL DPVTKRKQNY IYEDGSEGSV SKGFLCPQYS KCVSNANPYN GRISFDNIVN 660
  661 SMELVFVIMS ANTFTDLMYY TMDSDEMAAC LFFIVCIFVL TIWLLNLLIA VLVSSFEIAN 720
  721 EEYKKKKFIY GSRKTGYVAR IVTGYWKYFK LKANQTKFPN WSQKGLAIYS HVEFIFVILI 780
  781 ICDIGMRASV KVSTSANCNN ILLKTDRGIS IVLFIESLAR LVLYLPNMWK FLTKPSYVYD 840
  841 FIISIITLVI SCLAVEGVLG HMYAWLSIFH ISRFYRVIIS FNLTKKLWKQ ILSNGVMIWN 900
  901 LSSFYFFFTF LVAIIMAVYF EGVIPPEEMA DQPFGMYSLP NSFLSLFIIG STENWTDILY 960
  961 ALQKHSPNIS STFFCSVFFI IWFLLSNSVI LNIFIALISE SMEVKEEEKR PQQIKHYLKF1020
 1021 VYPQKIQEYT HASLVARIRK KFFGGHRNED TRDFKQFLMR GTAIMNIAQN MGELADEFKE1080
 1081 PPSENLFKKG LSKLTIGVPS LKRLRMFANN PFYKNSDVVF TETNDINGRT YILELNEYED1140
 1141 EKLDYLKKYP LFNYSYYFFS PQHRFRRFCQ RLVPPSTGKR TDGSRFFEDS TDLYNKRSYF1200
 1201 HHIERDVFVF IFALATILLI VCSCYVTPLY RMHHKMGTWN WSSALDCAFI GAFSIEFIVK1260
 1261 TVADGFIYSP NAYLRNPWNF IDFCVLISMW INLIAYLKNN GNLSRIFKGL TALRALRCLT1320
 1321 ISNTARQTFN LVMFDGLNKI FEAGLISLSL LFPFTVWGLS IFKGRLGTCN DGSLGRADCY1380
 1381 NEYSNSVFQW DIMSPRVYQQ PYLHLDSFAS AFSSLYQIIS LEGWVDLLEN MMNSSGIGTP1440
 1441 ATVMGSAGNA LFLVLFNFLS MVFILNLFVS FIVNNQARTT GSAYFTIEEK AWLESQKLLS1500
 1501 QAKPKAIPNL IELSRVRQFF YQLAVEKKNF YYASFLQVVL YLHIIMLLSR SYNPGNLIGY1560
 1561 QGVYFMFSTS VFLIQEALHM CGEGPRLYFR QKWNSIRLSI IIIAFIMNAV AFHVPASHYW1620
 1621 FHNIKGFFLL VIFLFIIPQN DTLTELLETA MASLPPILSL TYTWGVLFLV YAIALNQIFG1680
 1681 LTRLGSNTTD NINFRTVIKS MIVLFRCSFG EGWNYIMADL TVSEPYCSSD DNSTYTDCGS1740
 1741 ETYAYLLLMS WNIISMYIFV NMFVSLIIGN FSYVYRSGGS RSGINRSEIK KYIEAWSKFD1800
 1801 TDGTGELELS YLPRIMHSFD GPLSFKIWEG RLTIKSLVEN YMEVNPDDPY DVKIDLIGLN1860
 1861 KELNTIDKAK IIQRKLQYRR FVQSIHYTNA YNGCIRFSDL LLQIPLYTAY SARECLGIDQ1920
 1921 YVHHLYILGK VDKYLENQRN FDVLEMVVTR WKFHCRMKRT IEPEWDVKDP TVSSHISNIN1980
 1981 VNLEPAPGIL EREPIATPRM DYGVNNFMWS PRMNQDSTME PPEEPIDNND DSANDLIDR