YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SNG1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSVGDEES QYIEDPSFAA AAAFTGGRDG VSYSNQRFAE GSGHSSDLAK SLEDYRPPDE  60
   61 KPSSLSSVGE GGANEEEKGG NDGGPLARIQ TGLFSPRLRN HRKKILSKFV LNNFFIACVC 120
  121 VSLISIYWGA CYGTDRYFFK VKNIVVLQDA PSNTSVQSIS AIIPSLLASV PGTWHIYNAT 180
  181 SFHRKFGTTN STEIDRKIVD LIYDERYWLA LNVKPNATDT LYNSLISQDA NSEFNSSIFF 240
  241 ESVFESGRDP SSVKSTILPL MQQLEVRLQK YYVKEYLPSL MSNITSNDRD LNINMENWAI 300
  301 AGQLLFTYND YRPFADRILM APLQVGLIYC ILLTVLQLSL YGKLHGEMAR VLKPKHILIY 360
  361 RLLISWATYF LLSIGFCTVS AIFRIDFTPA FGRGGFVVYW MSTWLVMMAV GGANENVLSL 420
  421 VIAYCPPYLS IWLMTWIILN ISASFYPMVL NNEFYRYGYI MPIHNAVDIY KVIFLNLTKR 480
  481 KMGRNYGILV AWVALNTSLM PFCMKFAGKK MQKNAMQAAE AAVAAATQRA SRPAEANTDK 540
  541 NNNPPGN

Type	Start	End	Confidence
Cytoplasmic	1	108	0.98
Transmembrane Helix	109	130	0.94
Non-Cytoplasmic	131	157	0.93
Transmembrane Helix	158	177	0.78
Cytoplasmic	178	293	0.81
Transmembrane Helix	294	308	0.24
Non-Cytoplasmic	309	319	0.36
Transmembrane Helix	320	341	0.73
Cytoplasmic	342	361	0.55
Transmembrane Helix	362	383	0.92
Non-Cytoplasmic	384	395	0.49
Transmembrane Helix	396	418	0.78
Cytoplasmic	419	427	0.37
Transmembrane Helix	428	450	0.80
Non-Cytoplasmic	451	485	0.57
Transmembrane Helix	486	508	0.77
Cytoplasmic	509	547	0.74