YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHO2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.96
Transmembrane Helix	55	77	0.81
Non-Cytoplasmic	78	91	0.69
Transmembrane Helix	92	109	0.80
Cytoplasmic	110	187	0.87
Transmembrane Helix	188	207	0.78
Non-Cytoplasmic	208	214	0.68
Transmembrane Helix	215	233	0.89
Cytoplasmic	234	362	0.87
Transmembrane Helix	363	383	0.86
Non-Cytoplasmic	384	389	0.68
Transmembrane Helix	390	411	0.91
Cytoplasmic	412	439	0.84
Transmembrane Helix	440	461	0.79
Non-Cytoplasmic	462	466	0.66
Transmembrane Helix	467	485	0.48
Cytoplasmic	486	528	0.51
Transmembrane Helix	529	557	0.71
Non-Cytoplasmic	558	869	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSCKTTLSE MVGSVTKDRG TINVEARTRS SNVTFKPPVT HDMVRSLFDP TLKKSLLEKC  60
   61 IALAIISNFF ICYWVFQRFG LQFTKYFFLV QYLFWRIAYN LGIGLVLHYQ SHYETLTNCA 120
  121 KTHAIFSKIP QNKDANSNFS TNSNSFSEKF WNFIRKFCQY EIRSKMPKEY DLFAYPEEIN 180
  181 VWLIFRQFVD LILMQDFVTY IIYVYLSIPY SWVQIFNWRS LLGVILILFN IWVKLDAHRV 240
  241 VKDYAWYWGD FFFLEESELI FDGVFNISPH PMYSIGYLGY YGLSLICNDY KVLLVSVFGH 300
  301 YSQFLFLKYV ENPHIERTYG DGTDSDSQMN SRIDDLISKE NYDYSRPLIN MGLSFNNFNK 360
  361 LRFTDYFTIG TVAALMLGTI MNARFINLNY LFITVFVTKL VSWLFISTIL YKQSQSKWFT 420
  421 RLFLENGYTQ VYSYEQWQFI YNYYLVLTYT LMIIHTGLQI WSNFSNINNS QLIFGLILVA 480
  481 LQTWCDKETR LAISDFGWFY GDFFLSNYIS TRKLTSQGIY RYLNHPEAVL GVVGVWGTVL 540
  541 MTNFAVTNII LAVLWTLTNF ILVKFIETPH VNKIYGKTKR VSGVGKTLLG LKPLRQVSDI 600
  601 VNRIENIIIK SLVDESKNSN GGAELLPKNY QDNKEWNILI QEAMDSVATR LSPYCELKIE 660
  661 NEQVETNFVL PTPVTLNWKM PIELYNGDDW IGLYKVIDTR ADREKTRVGS GGHWSATSKD 720
  721 SYMNHGLRHK ESVTEIKATE KYVQGKVTFD TSLLYFENGI YEFRYHSGNS HKVLLISTPF 780
  781 EISLPVLNTT TPELFEKDLT EFLTKVNVLK DGKFRPLGNK FFGMDSLKQL IKNSIGVELS 840
  841 SEYMRRVNGD AHVISHRAWD IKQTLDSLA