YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YGR125W
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	206	0.63
Transmembrane Helix	207	231	0.82
Cytoplasmic	232	237	0.60
Transmembrane Helix	238	261	0.78
Non-Cytoplasmic	262	301	0.75
Transmembrane Helix	302	324	0.91
Cytoplasmic	325	333	0.92
Transmembrane Helix	334	360	0.80
Non-Cytoplasmic	361	380	0.93
Transmembrane Helix	381	402	0.88
Cytoplasmic	403	410	0.78
Transmembrane Helix	411	431	0.94
Non-Cytoplasmic	432	470	0.91
Transmembrane Helix	471	492	0.84
Cytoplasmic	493	507	0.85
Transmembrane Helix	508	528	0.72
Non-Cytoplasmic	529	546	0.64
Transmembrane Helix	547	581	0.86
Cytoplasmic	582	599	0.81
Transmembrane Helix	600	628	0.88
Non-Cytoplasmic	629	1036	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRTIRRRRS NSSLSEAISV SLGINQDSSV NKMHRASVSA MSPPLCRSYM SGFFTGGNSP  60
   61 MINNLSDSKL PISNKQHPKV IHGSENLHRQ TAQLSNEFCS SSVEENSPTI KDYMDIIGNG 120
  121 DRKDDQSMRT IEENIDEEYS DEYSRLLLSP ASSNVDDDRN RGLQNSSLPE LEDGYAGGYQ 180
  181 SLRPSHNLRF RPRNLWHMCT SFPSKFAHYL PAAVLGLLLN ILDALSYGMI IFPITEPVFS 240
  241 HLGPTGISMF YISTIISQAV YSGGWSSFPS GIGSEMIEIT PFYHTMALAI KEALAGNDDE 300
  301 IITTTIFCYV ISSMLTGVVF YALGKLRLGK IVGFFPRHIL IGCIGGVGYF LIITGIEVTT 360
  361 RVAKFEYSWP FFSGLFTDYD TLAKWLLPVL LTVVLIGTQR YFKNSLVLPS FYILTLVLFH 420
  421 FIVAIIPTLS LDALRQAGWI FPIANSDSKW YDHYRLFNVH KVHWSLVLQQ IPTMMALTFF 480
  481 GILHVPINVP ALAMSLQMDK YDVDRELIAH GYSNFFSGLL GSVQNYLVYT NSVLFIRAGA 540
  541 DSPFAGFLLI ALTICIMIIG PVIISFIPIC IVGSLIFLLG YELLVEALVD TWNKLNRFEY 600
  601 LTVVIIVFTM GIFDFVLGII VGILIACFSF LVDSTKLQTI NGEYNGNVAR STVYRDYVQT 660
  661 KFLDGIGEQI YVLKLQNLLF FGTIISIEEK IERLLQISNK DATKRRIKYL ILDFKNINAD 720
  721 NIDYSAAEGF NRIKRFTETK RIKLIISSIK ERDRIYNAFN NVGLLNDVEL FADLNSALEW 780
  781 CENEFLFQYK QLRKKAKERL EEGKQNNVVS AVIAATKNKK IDTIGNGLNR GSNGDTARNL 840
  841 MSLPTNTPRN YQILSVAQNV FVNDEQAVKN FKKEYKDDEP VLPILLFALK QYRPDIISEV 900
  901 QKVREKEIKF WAQLCPYFTR RRLASQSHLL HADNIFFLVE TGMLKATYEL PQGTLYEIFS 960
  961 NGTCFGKIIA PGNAMPREQK LTIETETDSV LWVIDSSSLN KLKEDNLALY VEVALMVMCI1020
 1021 KDTRFKELLG YTLVSA