YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SHY1
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLGARSTY RWFSIAASIP TKNAIGKSTY LLASRNQQYR GIITSTVDWK PIKTGKSPND  60
   61 DSRRERSFGK KIVLGLMFAM PIISFYLGTW QVRRLKWKTK LIAACETKLT YEPIPLPKSF 120
  121 TPDMCEDWEY RKVILTGHFL HNEEMFVGPR KKNGEKGYFL FTPFIRDDTG EKVLIERGWI 180
  181 SEEKVAPDSR NLHHLSLPQE EHLKVVCLVR PPKKRGSLQW AKKDPNSRLW QVPDIYDMAR 240
  241 SSGCTPIQFQ ALYDMKDHPI IEEHTRNEAS QNNSTSSLWK FWKREPTTAV NGTQAVDNNT 300
  301 SKPRSRQEMP TDQTIEFDER QFIKAGVPIG RKPTIDLKNN HLQYLVTWYG LSFLSTIFLI 360
  361 VALRKAKRGG VVSQDQLMKE KLKHSRKYM

Type	Start	End	Confidence
Cytoplasmic	1	71	0.90
Transmembrane Helix	72	90	0.91
Non-Cytoplasmic	91	343	0.97
Transmembrane Helix	344	363	0.77
Cytoplasmic	364	389	0.79