YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZRT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVTTPWWK QWDPSEVTLA DKTPDDVWKT CVLQGVYFGG NEYNGNLGAR ISSVFVILFV  60
   61 STFFTMFPLI STKVKRLRIP LYVYLFAKYF GSGVIVATAF IHLMDPAYGA IGGTTCVGQT 120
  121 GNWGLYSWCP AIMLTSLTFT FLTDLFSSVW VERKYGLSHD HTHDEIKDTV VRNTAAVSSE 180
  181 NDNENGTANG SHDTKNGVEY YEDSDATSMD VVQSFQAQFY AFLILEFGVI FHSVMIGLNL 240
  241 GSVGDEFSSL YPVLVFHQSF EGLGIGARLS AIEFPRSKRW WPWALCVAYG LTTPICVAIG 300
  301 LGVRTRYVSG SYTALVISGV LDAISAGILL YTGLVELLAR DFIFNPQRTK DLRELSFNVI 360
  361 CTLFGAGIMA LIGKWA

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.98
Transmembrane Helix	47	70	0.88
Cytoplasmic	71	80	0.90
Transmembrane Helix	81	103	0.89
Non-Cytoplasmic	104	123	0.92
Transmembrane Helix	124	146	0.86
Cytoplasmic	147	218	0.96
Transmembrane Helix	219	240	0.87
Non-Cytoplasmic	241	249	0.81
Transmembrane Helix	250	272	0.84
Cytoplasmic	273	279	0.96
Transmembrane Helix	280	303	0.91
Non-Cytoplasmic	304	311	0.85
Transmembrane Helix	312	335	0.89
Cytoplasmic	336	354	0.91
Transmembrane Helix	355	373	0.97
Non-Cytoplasmic	374	376	0.76