YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AIM14
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKESPLITLV KRHSETHFAN IKYGYYVLII SLVYLIGLAL LRAFGRRTPS RSSSAFKNKI  60
   61 IYRLYDIDPA IHLGILFFAV LIPFYYHYSL TTQSTVYLKR LGRLSYALIP LNLFLTLRPN 120
  121 WFLRKNCTYT DFIPFHKWFS RIITVIGLLH GIFFIIKWAI DDNVSLKQKL ILKTFNFAGF 180
  181 IISILVLFLL ICSIGPMRRY NYRLFYIVHN LVNVAFILLT PIHSRPGVKF PFLLLNCTLL 240
  241 FIHIINRIVF AKSLMILNKN ANYSKTNLVH VRLPRAILPD YFEPGSHIRI SPYRRINPLY 300
  301 WLLPSHPYTI ASLAEDNSID LIIKETSTAE PGSQIESLRS NPKSFHLDQE KTYTLINSYP 360
  361 PSVPEECYSQ GTNIAIICGG SGISFALPLF RHFFNKENVK YLKMIWLIKD YSEYELVLDY 420
  421 LKTNGLTFEK KLSNNKRISV FISGEYTAET RLDEITTNID DENSEYEMGS FNNEDEDLSI 480
  481 SNFNSENADS NDNTPETSHS PTKENGSMIE VKSKHSFTLS NELKSFNNES AQVNQNETWL 540
  541 FSCGPPSLLQ LSKKYCNDER INFVCETYGL

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.93
Transmembrane Helix	23	44	0.93
Cytoplasmic	45	64	0.87
Transmembrane Helix	65	86	0.90
Non-Cytoplasmic	87	101	0.81
Transmembrane Helix	102	122	0.82
Cytoplasmic	123	137	0.88
Transmembrane Helix	138	160	0.90
Non-Cytoplasmic	161	173	0.82
Transmembrane Helix	174	195	0.90
Cytoplasmic	196	203	0.75
Transmembrane Helix	204	223	0.92
Non-Cytoplasmic	224	229	0.76
Transmembrane Helix	230	250	0.87
Cytoplasmic	251	570	0.65