YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VPS73
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.94
Transmembrane Helix	26	45	0.90
Non-Cytoplasmic	46	90	0.95
Transmembrane Helix	91	111	0.91
Cytoplasmic	112	119	0.74
Transmembrane Helix	120	138	0.87
Non-Cytoplasmic	139	144	0.77
Transmembrane Helix	145	167	0.93
Cytoplasmic	168	177	0.80
Transmembrane Helix	178	199	0.84
Non-Cytoplasmic	200	206	0.80
Transmembrane Helix	207	228	0.92
Cytoplasmic	229	305	0.95
Transmembrane Helix	306	327	0.89
Non-Cytoplasmic	328	337	0.86
Transmembrane Helix	338	360	0.91
Cytoplasmic	361	367	0.86
Transmembrane Helix	368	387	0.95
Non-Cytoplasmic	388	393	0.85
Transmembrane Helix	394	417	0.90
Cytoplasmic	418	428	0.93
Transmembrane Helix	429	451	0.86
Non-Cytoplasmic	452	456	0.77
Transmembrane Helix	457	476	0.94
Cytoplasmic	477	486	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRILSSASL LSNVSMPRQN KHKITKALCY AIIVASIGSI QFGYHLSELN APQQVLSCSE  60
   61 FDIPMEGYPY DRTWLGKRGY KQCIPLNDEQ IGIVTSVFCI GGILGSYFAT SLANIYGRKF 120
  121 SSLINCTLNI VGSLIIFNSN SYRGLIIGRI LVGISCGSLI VIIPLFIKEV APSGWEGLLG 180
  181 SMTQICIRLG VLLTQGIALP LTDSYRWRWI LFGSFLIAVL NFFMWFIVDE SPKWLLAHGR 240
  241 VTDAKLSLCK LRGVTFDEAA QEIQDWQLQI ESGDPLIEPT TTNSISGSNS LWKYLRDRTN 300
  301 VKSRHVITVL LFGQQFCGIN SIVLYGTKII SQLYPQHAIR INFFISMVNV LVTILVSLLI 360
  361 HSLPRKPLLM TSTVLVSVTA FIMGIAMNHN KMNLLIVFSF IYMGVFTMGL NPLPFIIMRE 420
  421 VSKPQDMVLA QRYGTICNWV GTFIIAYTFP IIHDVLSGYV FIIFAIIACS ISAFIWKKVP 480
  481 ETKRSG