YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YFL040W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.94
Transmembrane Helix	23	46	0.80
Non-Cytoplasmic	47	67	0.87
Transmembrane Helix	68	88	0.93
Cytoplasmic	89	100	0.75
Transmembrane Helix	101	120	0.90
Non-Cytoplasmic	121	125	0.66
Transmembrane Helix	126	146	0.85
Cytoplasmic	147	156	0.83
Transmembrane Helix	157	179	0.89
Non-Cytoplasmic	180	185	0.74
Transmembrane Helix	186	205	0.94
Cytoplasmic	206	275	0.96
Transmembrane Helix	276	301	0.83
Non-Cytoplasmic	302	312	0.88
Transmembrane Helix	313	334	0.87
Cytoplasmic	335	340	0.85
Transmembrane Helix	341	362	0.92
Non-Cytoplasmic	363	385	0.93
Transmembrane Helix	386	412	0.84
Cytoplasmic	413	425	0.87
Transmembrane Helix	426	447	0.92
Non-Cytoplasmic	448	454	0.78
Transmembrane Helix	455	475	0.94
Cytoplasmic	476	540	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAMKAIVWR LPKMPKIKIT KTYEVTKITA ILTLVGFIMG LEVPSLATFL TNKTFNEYFK  60
   61 YPTPLQQGLL MGSTPLGGIM GCFICCIMND RFSRIYQFQS GIIIWNIVTL LNFCIWDILG 120
  121 LLICRMIKGM ILGNFSILVA SYANEVIPRG KRGSTMSYIQ LCLTIGILVM HYLCIALSLW 180
  181 DSHFAFRIAW CIGIIPGLLF WMASYALPES YHWLVLHGKM SEAQEIQHNL AKKFNESQPR 240
  241 DAVPEMSKIE LAGDFWIGVN DLDFSKKLPR GSFKPLILGM TLQLLVQFSG INIILGYITY 300
  301 ICEIVGLEGN VKLFTSSIPY FINMVLSLLP ITFIDYTSRK LITLLGGFPI SGLLITIGAL 360
  361 FVKYGQDTKP IDGNRSLVWS IGENPFVGGW ILTLCFLIVG IFAMSLSSIP WVYTNEMLPS 420
  421 RVKVKGFAIC VTFGWLGNFI LTFLCPVMIE RLKGTTFIIF GSLTFLISLS VLIWFPETKG 480
  481 MSIEDIDKFF EFESKEGTNL HGEKGIKTPD SNSNGGSTRS SQEGQLHKPI KLKSDEEMII 540
  541