YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BST1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.93
Transmembrane Helix	52	74	0.83
Non-Cytoplasmic	75	678	0.97
Transmembrane Helix	679	697	0.68
Cytoplasmic	698	705	0.63
Transmembrane Helix	706	728	0.89
Non-Cytoplasmic	729	744	0.75
Transmembrane Helix	745	765	0.81
Cytoplasmic	766	772	0.56
Transmembrane Helix	773	787	0.30
Non-Cytoplasmic	788	803	0.50
Transmembrane Helix	804	830	0.80
Cytoplasmic	831	860	0.56
Transmembrane Helix	861	880	0.58
Non-Cytoplasmic	881	883	0.45
Transmembrane Helix	884	903	0.78
Cytoplasmic	904	918	0.68
Transmembrane Helix	919	941	0.89
Non-Cytoplasmic	942	952	0.67
Transmembrane Helix	953	973	0.89
Cytoplasmic	974	982	0.73
Transmembrane Helix	983	1003	0.86
Non-Cytoplasmic	1004	1008	0.60
Transmembrane Helix	1009	1028	0.77
Cytoplasmic	1029	1029	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIRRLVSVI TRPIINKVNS SGQYSRVLAT REDQDKASPK YMNNDKIAKK PYTYRLFSIL  60
   61 GILSICSLLL ISLLKPFNGA DAPQCESIYM FPSYARIDGF DERYTPLAHK YHLYLYREQS 120
  121 VDREPLNGDE LQLDGIPVLF IPGNAGSFRQ CRSIASACSN IYFDSNTRAT LRNENVRNLD 180
  181 FFTADFNEDF TAFHGETMLD QAEYLNDAIK YILSLYERTP DYPHPKPQSV IIVGHSMGGI 240
  241 VSRVMLTLKN HVPGSISTIL TLSSPHAASP VTFDGDILKL YKNTNEYWRK QLSQNDSFFS 300
  301 KNISLVSITG GILDTTLPAD YASVEDLVSL ENGFTSFTTT IPDVWTPIDH LAIVWCKQLR 360
  361 EVLARLLLES IDASKPEKVK PLNQRLQIAR KLLLSGFEDY SWMNSKLNYP QENLQEFSDN 420
  421 FFSDYATLEM NDVLDFEMFN LEKWHNNYTK INIPSNISST EHLHFTLLTS LDMPMIYFCT 480
  481 ESRVNLSCIT AVDSILTVPR SSKDTQFAAD SSFGEAKNPF KAVSVGKNIL QKYDYLMISK 540
  541 PTYGEFSEQE GMEDNQGFLL ALLRNVSNVQ IVNTTPSQIL LFGEQLHLDG KDIEQVISFS 600
  601 NLWDSLLSYK LETKIEASNE GIASEETLFQ PFIRQWVYEP FESKWHLNII NKSLDINMHN 660
  661 VAPFIPLNES EPRSLQLSFF IPPGMSLEAK MTINWSLTLK MLFIRYRLAL ASFPVAFIAL 720
  721 VLSYQFYWYN KTSEFPSFDS TLGYILRKHG ILMFFTLFLA SPVVNNKLVQ RILYLLDPVG 780
  781 LNYPFLLSER NMHANFYYLG IRDWFMSTIG ILFGVMTVGL LALVSKIFGS LEILVIFLQR 840
  841 KLSKKNTEDK EAFDTIEHKA YGKGRLMASV LLLLLVFFHI PYQMAFVISL VIQIATCIRV 900
  901 ALLKLSNNEQ KLNLLNYNMT LLLLLLFVSA INIPIIIVFL HNVAIKWETS FRSHHNILAV 960
  961 APIIFLVGNN SIFKMPNSVP LDTWDGKVTI ILFVYLTVFS FIYGIRNLYW IHHLVNIICA1020
 1021 WLLFFETIH