YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OXA1_YEAST
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.31
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKLTSRLVT SRFAASSRLA TARTIVLPRP HPSWISFQAK RFNSTGPNAN DVSEIQTQLP  60
   61 SIDELTSSAP SLSASTSDLI ANTTQTVGEL SSHIGYLNSI GLAQTWYWPS DIIQHVLEAV 120
  121 HVYSGLPWWG TIAATTILIR CLMFPLYVKS SDTVARNSHI KPELDALNNK LMSTTDLQQG 180
  181 QLVAMQRKKL LSSHGIKNRW LAAPMLQIPI ALGFFNALRH MANYPVDGFA NQGVAWFTDL 240
  241 TQADPYLGLQ VITAAVFISF TRLGGETGAQ QFSSPMKRLF TILPIISIPA TMNLSSAVVL 300
  301 YFAFNGAFSV LQTMILRNKW VRSKLKITEV AKPRTPIAGA SPTENMGIFQ SLKHNIQKAR 360
  361 DQAERRQLMQ DNEKKLQESF KEKRQNSKIK IVHKSNFINN KK

Type	Start	End	Confidence
Signal Peptide	1	22	0.30
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	124	0.56
Transmembrane Helix	125	144	0.76
Cytoplasmic	145	199	0.91
Transmembrane Helix	200	218	0.91
Non-Cytoplasmic	219	245	0.87
Transmembrane Helix	246	265	0.89
Cytoplasmic	266	278	0.84
Transmembrane Helix	279	304	0.83
Non-Cytoplasmic	305	402	0.62