YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YER140W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHKDTAVAK DTAKKRLLRR NSAPSAIHII SRLDKKWSFL WNTIDRHNIV EEQDESSAAK  60
   61 SEEEHEDDYE LEQLLNMIRI PMFLEKFMLF ALLTSLDCFL YYFTVLPIRL IKGYVKQFKS 120
  121 YRQHYRLQQR SGHKNKIPFR YRITSREYKE RCMIFIIVIS SILLSKLDTS KLYHRIKRQS 180
  181 TMKLYMLFSV LEMADKMLAS LGQSLLTVML SRKNSERILL HKCLLVSMSL TYVTIHGYVL 240
  241 VYQAISLNIA VNSYSNALLT LLLSMQFAEI KSSVLKKFDK EGFFQITIAD VVERFKLTLL 300
  301 LSITGLRNLQ SWSSSLSNTS INFWSPRSTL SIVINILCGP MVSVVGSEVL VDWAKHAYIT 360
  361 KFNRIRPQIY DKFYYIIYKD YSTRTHKLED RLGLPLPAFV VLFIVMVRPT LFKSSEPSYL 420
  421 PSLFRILFMG ASVFLLALLA KFTLDLILIK WSKRIEQRFR DQAFNTVVTE EEYVPGLLSG 480
  481 GMGKVDVSTR IALHSDYNKE NRIETESVSP MRKRKTTLTA ECTPPSLNDI RRQKDSKNPR 540
  541 SLENVARYKM VSKRIW

Type	Start	End	Confidence
Cytoplasmic	1	86	0.72
Transmembrane Helix	87	105	0.81
Non-Cytoplasmic	106	151	0.61
Transmembrane Helix	152	169	0.59
Cytoplasmic	170	217	0.76
Transmembrane Helix	218	240	0.85
Non-Cytoplasmic	241	248	0.66
Transmembrane Helix	249	268	0.68
Cytoplasmic	269	391	0.69
Transmembrane Helix	392	412	0.92
Non-Cytoplasmic	413	422	0.85
Transmembrane Helix	423	444	0.89
Cytoplasmic	445	556	0.91