YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FCY22
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.99
Transmembrane Helix	89	111	0.87
Non-Cytoplasmic	112	119	0.75
Transmembrane Helix	120	141	0.93
Cytoplasmic	142	161	0.82
Transmembrane Helix	162	181	0.93
Non-Cytoplasmic	182	197	0.84
Transmembrane Helix	198	220	0.92
Cytoplasmic	221	226	0.89
Transmembrane Helix	227	246	0.88
Non-Cytoplasmic	247	257	0.82
Transmembrane Helix	258	282	0.84
Cytoplasmic	283	297	0.87
Transmembrane Helix	298	323	0.88
Non-Cytoplasmic	324	353	0.84
Transmembrane Helix	354	374	0.82
Cytoplasmic	375	394	0.75
Transmembrane Helix	395	416	0.91
Non-Cytoplasmic	417	425	0.88
Transmembrane Helix	426	445	0.91
Cytoplasmic	446	464	0.82
Transmembrane Helix	465	485	0.93
Non-Cytoplasmic	486	499	0.77
Transmembrane Helix	500	520	0.79
Cytoplasmic	521	530	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEKLAMSMV DIKDAGSELR DLESGALDTK SSAADVYYEG VELHRTNEFI DNKPSFFNRI  60
   61 AAALNAETKG IEPVTEDEKN DDSILNAATI WFSANMVIVA YSVGALGPLV FGLNFGQSVL 120
  121 VIIFFNILGL IPVALFSLFG VELGLRQMIL SRYLAGNITA RFFSLVNVIA CVGWCVLNIS 180
  181 VSAQLLNMVN EGSGHNCPIW AGCLIIAGGT VLVTFFGYSV VHAYEKWSWV PNFAAFLVII 240
  241 AQLSRSGKFK GGEWVGGATT AGGVLSFGSS VFGSAAGWAT YAADYTVYMP KTTSKYKIFF 300
  301 SVVAGLAFPL FFTMILGAAC GMAALNDPTW KSYYDKNAMG GVIYAILVPN SLNGFGQFCC 360
  361 VLLALSTVAN NVPGMYTVAL SAQALWAPLA KIPRVVWTMA GNAATLGISI PATYYFDGFM 420
  421 ENFMDSIGYY LAIYIAIACS EHFIYRRSFS AYNIDDWDNW EHLPIGIAGT AALIAGAFGV 480
  481 ALGMCQTYWV GEISRLIGEY GGDIGFELGG SWAFIIYNIV RPLELKYFGR