YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FCY21
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.97
Transmembrane Helix	91	111	0.87
Non-Cytoplasmic	112	118	0.83
Transmembrane Helix	119	141	0.91
Cytoplasmic	142	157	0.82
Transmembrane Helix	158	177	0.91
Non-Cytoplasmic	178	195	0.83
Transmembrane Helix	196	218	0.93
Cytoplasmic	219	224	0.89
Transmembrane Helix	225	244	0.90
Non-Cytoplasmic	245	261	0.84
Transmembrane Helix	262	280	0.90
Cytoplasmic	281	295	0.83
Transmembrane Helix	296	321	0.89
Non-Cytoplasmic	322	350	0.86
Transmembrane Helix	351	372	0.84
Cytoplasmic	373	392	0.90
Transmembrane Helix	393	416	0.90
Non-Cytoplasmic	417	423	0.89
Transmembrane Helix	424	443	0.93
Cytoplasmic	444	462	0.90
Transmembrane Helix	463	483	0.94
Non-Cytoplasmic	484	497	0.79
Transmembrane Helix	498	518	0.82
Cytoplasmic	519	528	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQTHEMSLN GTQYLKYELK DLESRAHDAK TPSTNEFYDD VESHGTEELV EAKLSFLNRI  60
   61 AAGLSAETKG IEPITEDEKT DDSILNAASM WFSANMVLPA YAIGALGPMV FDLNFGQSVF 120
  121 VIIFFNLLGL VSVAFFSVFG AELGLRQMIL SRYLVGNIAA RIFSFINFIA CIGWGIVNTV 180
  181 ASSQVLNMVN PGHQCPLWAG CIVIIGATVI VTFFGYGVIH AYEKWAWVPN FAVFLVIIAR 240
  241 LARSKKFVLG EWTSGPTTAG NVLSFGSTVY GFAAGWTTYA ADYTVYMPRK TNKYKIFFSL 300
  301 VVGLATPLYF TMILGAAVAM AAIGDPAWKT YYDENSIGGL TFAVLVPNSV HGFGQFCCVL 360
  361 LSLSTIANNV PNMYTIALSV QATWEPLAKV PRVIWTLLGN AAALGIAIPA CYYFSTFMNY 420
  421 FMDSIGYYLA IYIAIACSEH FIYRRSFSAY NVDDWDSWER LPIGIAGTAA LIVGAFGVAL 480
  481 GMCQTYWVGE ISRLIGDYGG DIGFELGLSW AFIVYNIARP FELKYFGR