YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.99
Transmembrane Helix	51	73	0.87
Non-Cytoplasmic	74	107	0.92
Transmembrane Helix	108	127	0.95
Cytoplasmic	128	136	0.76
Transmembrane Helix	137	156	0.94
Non-Cytoplasmic	157	163	0.87
Transmembrane Helix	164	186	0.88
Cytoplasmic	187	196	0.83
Transmembrane Helix	197	219	0.87
Non-Cytoplasmic	220	227	0.87
Transmembrane Helix	228	249	0.90
Cytoplasmic	250	313	0.97
Transmembrane Helix	314	332	0.84
Non-Cytoplasmic	333	352	0.76
Transmembrane Helix	353	374	0.89
Cytoplasmic	375	381	0.91
Transmembrane Helix	382	402	0.94
Non-Cytoplasmic	403	421	0.84
Transmembrane Helix	422	445	0.91
Cytoplasmic	446	457	0.90
Transmembrane Helix	458	479	0.83
Non-Cytoplasmic	480	484	0.69
Transmembrane Helix	485	505	0.91
Cytoplasmic	506	564	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAQSSIDS DGDVRDADIH VAPPVEKEWS DGFDDNEVIN GDNVEPPKRG LIGYLVIYLL  60
   61 CYPISFGGFL PGWDSGITAG FINMDNFKMN FGSYKHSTGE YYLSNVRMGL LVAMFSIGCA 120
  121 IGGLIFARLA DTLGRRLAIV IVVLVYMVGA IIQISSNHKW YQYFVGKIIY GLGAGGCSVL 180
  181 CPMLLSEIAP TDLRGGLVSL YQLNMTFGIF LGYCSVYGTR KYDNTAQWRV PLGLCFLWAL 240
  241 IIIIGMLLVP ESPRYLIECE RHEEARASIA KINKVSPEDP WVLKQADEIN AGVLAQRELG 300
  301 EASWKELFSV KTKVLQRLIT GILVQTFLQL TGENYFFFYG TTIFKSVGLT DGFETSIVLG 360
  361 TVNFFSTIIA VMVVDKIGRR KCLLFGAAGM MACMVIFASI GVKCLYPHGQ DGPSSKGAGN 420
  421 AMIVFTCFYI FCFATTWAPV AYIVVAESFP SKVKSRAMSI STACNWLWQF LIGFFTPFIT 480
  481 GSIHFYYGYV FVGCLVAMFL YVFFFLPETI GLSLEEIQLL YEEGIKPWKS ASWVPPSRRG 540
  541 ISSEESKTEK KDWKKFLKFS KNSD