YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ITR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.98
Transmembrane Helix	82	102	0.89
Non-Cytoplasmic	103	129	0.90
Transmembrane Helix	130	150	0.92
Cytoplasmic	151	158	0.75
Transmembrane Helix	159	180	0.88
Non-Cytoplasmic	181	186	0.71
Transmembrane Helix	187	205	0.96
Cytoplasmic	206	215	0.83
Transmembrane Helix	216	238	0.86
Non-Cytoplasmic	239	246	0.72
Transmembrane Helix	247	266	0.94
Cytoplasmic	267	333	0.96
Transmembrane Helix	334	353	0.86
Non-Cytoplasmic	354	372	0.84
Transmembrane Helix	373	394	0.92
Cytoplasmic	395	401	0.92
Transmembrane Helix	402	424	0.94
Non-Cytoplasmic	425	442	0.83
Transmembrane Helix	443	465	0.89
Cytoplasmic	466	479	0.91
Transmembrane Helix	480	503	0.85
Non-Cytoplasmic	504	509	0.79
Transmembrane Helix	510	531	0.91
Cytoplasmic	532	584	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIHIPYLTS KTSQSNVGDA VGNADSVEFN SEHDSPSKRG KITLESHEIQ RAPASDDEDR  60
   61 IQIKPVNDED DTSVMITFNQ SLSPFIITLT FVASISGFMF GYDTGYISSA LISIGTDLDH 120
  121 KVLTYGEKEI VTAATSLGAL ITSIFAGTAA DIFGRKRCLM GSNLMFVIGA ILQVSAHTFW 180
  181 QMAVGRLIMG FGVGIGSLIA PLFISEIAPK MIRGRLTVIN SLWLTGGQLV AYGCGAGLNY 240
  241 VNNGWRILVG LSLIPTAVQF TCLCFLPDTP RYYVMKGDLA RATEVLKRSY TDTSEEIIER 300
  301 KVEELVTLNQ SIPGKNVPEK VWNTIKELHT VPSNLRALII GCGLQAIQQF TGWNSLMYFS 360
  361 GTIFETVGFK NSSAVSIIVS GTNFIFTLVA FFSIDKIGRR TILLIGLPGM TMALVVCSIA 420
  421 FHFLGIKFDG AVAVVVSSGF SSWGIVIIVF IIVFAAFYAL GIGTVPWQQS ELFPQNVRGI 480
  481 GTSYATATNW AGSLVIASTF LTMLQNITPA GTFAFFAGLS CLSTIFCYFC YPELSGLELE 540
  541 EVQTILKDGF NIKASKALAK KRKQQVARVH ELKYEPTQEI IEDI