YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHX1
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	60	0.86
Transmembrane Helix	61	80	0.95
Cytoplasmic	81	91	0.70
Transmembrane Helix	92	111	0.88
Non-Cytoplasmic	112	152	0.49
Transmembrane Helix	153	177	0.90
Cytoplasmic	178	186	0.41
Transmembrane Helix	187	209	0.52
Non-Cytoplasmic	210	257	0.64
Transmembrane Helix	258	282	0.90
Cytoplasmic	283	289	0.71
Transmembrane Helix	290	307	0.55
Non-Cytoplasmic	308	311	0.53
Transmembrane Helix	312	332	0.80
Cytoplasmic	333	344	0.71
Transmembrane Helix	345	364	0.67
Non-Cytoplasmic	365	375	0.50
Transmembrane Helix	376	398	0.84
Cytoplasmic	399	432	0.61
Transmembrane Helix	433	452	0.84
Non-Cytoplasmic	453	458	0.49
Transmembrane Helix	459	483	0.86
Cytoplasmic	484	633	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKVLLNIA FKVLLTTAKR AVDPDDDDEL LPSPDLPGSD DPIAGDPDVD LNPVTEEMFS  60
   61 SWALFIMLLL LISALWSSYY LTQKRIRAVH ETVLSIFYGM VIGLIIRMSP GHYIQDTVTF 120
  121 NSSYFFNVLL PPIILNSGYE LNQVNFFNNM LSILIFAIPG TFISAVVIGI ILYIWTFLGL 180
  181 ESIDISFADA MSVGATLSAT DPVTILSIFN AYKVDPKLYT IIFGESLLND AISIVMFETC 240
  241 QKFHGQPATF SSVFEGAGLF LMTFSVSLLI GVLIGILVAL LLKHTHIRRY PQIESCLILL 300
  301 IAYESYFFSN GCHMSGIVSL LFCGITLKHY AYYNMSRRSQ ITIKYIFQLL ARLSENFIFI 360
  361 YLGLELFTEV ELVYKPLLII VAAISICVAR WCAVFPLSQF VNWIYRVKTI RSMSGITGEN 420
  421 ISVPDEIPYN YQMMTFWAGL RGAVGVALAL GIQGEYKFTL LATVLVVVVL TVIIFGGTTA 480
  481 GMLEVLNIKT GCISEEDTSD DEFDIEAPRA INLLNGSSIQ TDLGPYSDNN SPDISIDQFA 540
  541 VSSNKNLPNN ISTTGGNTFG GLNETENTSP NPARSSMDKR NLRDKLGTIF NSDSQWFQNF 600
  601 DEQVLKPVFL DNVSPSLQDS ATQSPADFSS QNH