YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDR387C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.92
Transmembrane Helix	39	59	0.83
Non-Cytoplasmic	60	83	0.83
Transmembrane Helix	84	103	0.91
Cytoplasmic	104	110	0.86
Transmembrane Helix	111	130	0.96
Non-Cytoplasmic	131	136	0.71
Transmembrane Helix	137	158	0.91
Cytoplasmic	159	168	0.83
Transmembrane Helix	169	190	0.93
Non-Cytoplasmic	191	198	0.87
Transmembrane Helix	199	220	0.92
Cytoplasmic	221	346	0.99
Transmembrane Helix	347	369	0.88
Non-Cytoplasmic	370	385	0.85
Transmembrane Helix	386	406	0.94
Cytoplasmic	407	414	0.88
Transmembrane Helix	415	435	0.96
Non-Cytoplasmic	436	441	0.82
Transmembrane Helix	442	465	0.90
Cytoplasmic	466	474	0.88
Transmembrane Helix	475	499	0.82
Non-Cytoplasmic	500	506	0.87
Transmembrane Helix	507	526	0.94
Cytoplasmic	527	555	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDESEDVY SDLYSIISQV TSNTANDIEQ LPYALTFKTS LIFVGATIGG LLFGYDTGVI  60
   61 SGVLLSLKPE DLSLVVLTDV QKELITSSTS VGSFFGSILA FPLADRYGRR ITLAICCSIF 120
  121 ILAAIGMAIA RTLTFLICGR LLVGIAVGVS AQCVPLFLSE ISPSRIRGFM LTLNIIAITG 180
  181 GQLVSYVIAS LMKEIDNSWR YLFALSAIPA ILFLSILDFI PESPRWSISK GDILYTRDSL 240
  241 RMLYPTASTY HVNSKIKQLI IELDKLRLYE DASEPLLVQS QSVIRYMDSS TSGTLSPPNI 300
  301 KRLSSNTERT SNTMSSSSAY LSALRGPAPN GALASNKKKR HRMEPRTIRA LIVGCMLMFF 360
  361 QQITGFNAFM YYAAIIFSKF NIKNPLLPPI LIASTNFIFT FFAMYTMDSL GRRAILLRTI 420
  421 LIMTVGLLLC SVGFGHDQVN LLLISVVIYV AAYASAMGSV PWTCVEFLPL NRRSFGASCI 480
  481 ACTNWLTNAF VSMTYLSTIN TIGDENTMLI FAFFTVCAWF FVYFWYPEVK GLSLEEVGRV 540
  541 FDNGIDVHYV FRTYH