YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXT3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.99
Transmembrane Helix	57	78	0.91
Non-Cytoplasmic	79	111	0.93
Transmembrane Helix	112	131	0.95
Cytoplasmic	132	140	0.79
Transmembrane Helix	141	161	0.94
Non-Cytoplasmic	162	167	0.88
Transmembrane Helix	168	189	0.94
Cytoplasmic	190	200	0.82
Transmembrane Helix	201	221	0.90
Non-Cytoplasmic	222	231	0.83
Transmembrane Helix	232	253	0.90
Cytoplasmic	254	321	0.94
Transmembrane Helix	322	336	0.73
Non-Cytoplasmic	337	356	0.65
Transmembrane Helix	357	378	0.81
Cytoplasmic	379	385	0.91
Transmembrane Helix	386	407	0.92
Non-Cytoplasmic	408	425	0.88
Transmembrane Helix	426	449	0.90
Cytoplasmic	450	461	0.91
Transmembrane Helix	462	483	0.87
Non-Cytoplasmic	484	488	0.76
Transmembrane Helix	489	509	0.92
Cytoplasmic	510	567	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTPDLISP QKSSENSNAD LPSNSSQVMN MPEEKGVQDD FQAEADQVLT NPNTGKGAYV  60
   61 TVSICCVMVA FGGFVFGWDT GTISGFVAQT DFLRRFGMKH KDGSYYLSKV RTGLIVSIFN 120
  121 IGCAIGGIIL AKLGDMYGRK MGLIVVVVIY IIGIIIQIAS INKWYQYFIG RIISGLGVGG 180
  181 IAVLSPMLIS EVAPKEMRGT LVSCYQLMIT LGIFLGYCTN FGTKNYSNSV QWRVPLGLCF 240
  241 AWALFMIGGM TFVPESPRYL VEAGQIDEAR ASLSKVNKVA PDHPFIQQEL EVIEASVEEA 300
  301 RAAGSASWGE LFTGKPAMFK RTMMGIMIQS LQQLTGDNYF FYYGTTVFNA VGMSDSFETS 360
  361 IVFGVVNFFS TCCSLYTVDR FGRRNCLLYG AIGMVCCYVV YASVGVTRLW PNGEGNGSSK 420
  421 GAGNCMIVFA CFYIFCFATT WAPIAYVVIS ETFPLRVKSK AMSIATAANW LWGFLIGFFT 480
  481 PFITGAINFY YGYVFMGCMV FAYFYVFFFV PETKGLTLEE VNDMYAEGVL PWKSASWVPT 540
  541 SQRGANYDAD ALMHDDQPFY KKMFGKK