YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDR338C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	234	0.75
Transmembrane Helix	235	258	0.70
Non-Cytoplasmic	259	265	0.59
Transmembrane Helix	266	287	0.67
Cytoplasmic	288	306	0.60
Transmembrane Helix	307	329	0.89
Non-Cytoplasmic	330	345	0.69
Transmembrane Helix	346	364	0.79
Cytoplasmic	365	375	0.63
Transmembrane Helix	376	400	0.82
Non-Cytoplasmic	401	407	0.67
Transmembrane Helix	408	432	0.90
Cytoplasmic	433	447	0.75
Transmembrane Helix	448	466	0.62
Non-Cytoplasmic	467	485	0.63
Transmembrane Helix	486	511	0.78
Cytoplasmic	512	531	0.64
Transmembrane Helix	532	551	0.91
Non-Cytoplasmic	552	571	0.63
Transmembrane Helix	572	587	0.42
Cytoplasmic	588	602	0.47
Transmembrane Helix	603	625	0.87
Non-Cytoplasmic	626	629	0.55
Transmembrane Helix	630	653	0.90
Cytoplasmic	654	695	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGILSKTLS EVHPSLRTNG MGIGNTHRRI SLGFLPPNKK NPLVRKFRAR TRNIDQRSFR  60
   61 SLTDDFGSNV HEPNPYLGNI DEEPDLYYHD EEDGELSRTI SLPSRVSETP ELSPQDVDWI 120
  121 LHEHERRYSS VCNSDNEEAS QSNTPDRIQE YSGRELEYDE FMNRLQAQKQ KLTRSAVTDA 180
  181 KGTSHHRRPS FVSVTSRGSV PTIYQEIDEN DSEALAELAH SHVTFKSEAR VLASYSFPLI 240
  241 FTFLLEQIFP MVCSLTVGHL GKNELAAVSL ASMTSNITLA IFEGIATSLD TLCPQAYGSG 300
  301 RFYSVGVHLQ RCIAFSLVIY IPFAVMWWYS EPLLSYIIPE KELINLTSRF LRVLILGAPA 360
  361 YIFFENLKRF LQAQGIFDAG IYVLTICAPL NVLVSYTLVW NKYIGVGFIG AAIAVVLNFW 420
  421 LMFFLLLFYA LYIDGRKCWG GFSRKAFTHW NDLGHLAFSG IIMLEAEELS YELLTLFSAY 480
  481 YGVSYLAAQS AVSTMAALLY MIPFAIGIST STRIANFIGA KRTDFAHISS QVGLSFSFIA 540
  541 GFINCCILVF GRNLIANIYS KDPEVIKLIA QVLPLVGIVQ NFDSLNAVAG SCLRGQGMQS 600
  601 LGSIVNLMAY YLFGIPLALI LSWFFDMKLY GLWIGIGSAM LLIGLVEAYY VLFPDWDKIM 660
  661 TYAEILKETE DDEVDSDEYL TDSDDPDENT ALLGA