YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YFT2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRQLNYWSR KAYLIYPFQV FVGALLSIVV SSETLNHQKE TCALLKSSNI FNVIFAYKAN  60
   61 QLWPFLFFSL AFLQIYFHYL ARMDILPLPI SSTETSSSYL TYTNHWPLLK NRIISIMITQ 120
  121 YACKFVLKYL LLFLNFQFID HVFIWTGGEC SSGSKTTSAE KCRLENGKWD GGFDISGHFC 180
  181 FLVSISMILW MELHLFSRFV QAEDMFWVVN KWVRACLAIV CAVLVIWICI LWVTAIYYHT 240
  241 ILEKVLGCLM GFICPVFIYH ILPKIGILHN YLYL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	31	0.92
Non-Cytoplasmic	32	60	0.89
Transmembrane Helix	61	80	0.92
Cytoplasmic	81	124	0.88
Transmembrane Helix	125	144	0.67
Non-Cytoplasmic	145	174	0.81
Transmembrane Helix	175	196	0.89
Cytoplasmic	197	211	0.78
Transmembrane Helix	212	236	0.88
Non-Cytoplasmic	237	240	0.67
Transmembrane Helix	241	262	0.86
Cytoplasmic	263	274	0.71