YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDC1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYRNRSKSV LSTHSKKSDD KAHYKSRSKK KSKSRSKKRL RIYWRYISIV WILWLGLISY  60
   61 YESVVVKRAM KKCQWSTWED WPEGAESHRV GLFADPQIMD EYSYPGRPQI VNYFTRVIVD 120
  121 HYHRRNWKYV QYYLDPDSNF FLGDLFDGGR NWDDKQWIKE YTRFNQIFPK KPLRRTVMSL 180
  181 PGNHDIGFGD TVVESSLQRF SSYFGETSSS LDAGNHTFVL LDTISLSDKT NPNVSRVPRQ 240
  241 FLDNFAMGSH PLPRILLTHV PLWRDPEQQT CGQLRESKEP FPIQKGHQYQ TVIENDISQE 300
  301 ILTKIQPEIL FSGDDHDHCQ ISHSYPFQGK TKNAQEITVK SCAMNMGISR PAIQLLSLYN 360
  361 PSDLTMVNAG GEYASKTYQT ELCYMPDPYK AIRMYLWGLL FSAAFIAYMH FFPKSFNNRV 420
  421 ATIMNRVFTR PDGNTSDLPL PTSISKSKSK KSLTHSKYAV NDTRSIKQFL VNAIVLFVSV 480
  481 MPIFIYFYTV V

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	61	0.92
Non-Cytoplasmic	62	393	0.98
Transmembrane Helix	394	412	0.93
Cytoplasmic	413	468	0.92
Transmembrane Helix	469	489	0.93
Non-Cytoplasmic	490	491	0.78