YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VBA4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	254	0.97
Transmembrane Helix	255	276	0.91
Non-Cytoplasmic	277	282	0.85
Transmembrane Helix	283	305	0.89
Cytoplasmic	306	312	0.80
Transmembrane Helix	313	332	0.92
Non-Cytoplasmic	333	339	0.74
Transmembrane Helix	340	361	0.91
Cytoplasmic	362	372	0.92
Transmembrane Helix	373	393	0.92
Non-Cytoplasmic	394	406	0.83
Transmembrane Helix	407	429	0.89
Cytoplasmic	430	449	0.93
Transmembrane Helix	450	473	0.85
Non-Cytoplasmic	474	482	0.85
Transmembrane Helix	483	502	0.96
Cytoplasmic	503	522	0.93
Transmembrane Helix	523	545	0.95
Non-Cytoplasmic	546	562	0.75
Transmembrane Helix	563	581	0.94
Cytoplasmic	582	587	0.91
Transmembrane Helix	588	610	0.89
Non-Cytoplasmic	611	617	0.75
Transmembrane Helix	618	639	0.90
Cytoplasmic	640	651	0.87
Transmembrane Helix	652	674	0.90
Non-Cytoplasmic	675	738	0.94
Transmembrane Helix	739	759	0.84
Cytoplasmic	760	768	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKDRQRKK LREFAKLKNR QRNLRKSVQT LKNEVQREAK VPRTSNQIAL GNDKIEEINE  60
   61 NSPLLSAPSK QEEVSIPKAV DIDTIDAQPL HEGPKIDDSP QDEVNSIKGK PADKANEDDL 120
  121 KPPSQHEACG NSALQSSITD FSDRSVSPLQ SITSCNTPMS EHELPVSSSN SFERADDMPV 180
  181 VQADNQTSSS KSLHIVAPSP EVPVSGDEIT SYGYGSIPQS IGDVENGLNP PYVENTSSDE 240
  241 LVHDLTRRRI FSSCMCTYLF FIAMDSSIIL VIASKIASEF HELWRLSLVI SAYLLSNAIG 300
  301 QLVFLKLSLI SSVKLLLCIA QFSFILGGYL SWSSAHFWTF IFARCVTGFG GGSLIALKST 360
  361 IMNRFSQKND SRYSLSASMI TFAMGVVIGP FMMNLFDSSH GSGWRNAFLI PVPFCLVNAS 420
  421 IMLADMYSVK STLYGRPTPT LWKRFKNTLL SPDLYEILTL TLFLLCFVQV TSLDLTGLKN 480
  481 NTMIQALLFS VIIVCGILFF LIETSDTYMN SVISMSLQGD KRLIWTMIGI SFCFAALMCI 540
  541 IPFGTTYFII VLNLSTLQLA ERLSPFFFSI VLGYFSVSYF WKSKGQNFLL KFVLSGATLL 600
  601 LYVALMGVSL NLPVWKQYIC LSLPFLGSSM ILTLLSNLYH EYHEQRKSPI SGSIVYCFGA 660
  661 VGGTVGISLG GYVFHKTLIK LMHEKVMPFS KQGYLKKDLL KIIKHATESS DWVHESAPKF 720
  721 VFQTLIECYL QACRNVFKLS TLFFTITVVA IFIFNRIHCR SQNCLSLS