YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMN2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.56
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	309	0.98
Transmembrane Helix	310	332	0.90
Cytoplasmic	333	375	0.94
Transmembrane Helix	376	397	0.93
Non-Cytoplasmic	398	411	0.73
Transmembrane Helix	412	434	0.87
Cytoplasmic	435	443	0.89
Transmembrane Helix	444	467	0.89
Non-Cytoplasmic	468	478	0.72
Transmembrane Helix	479	500	0.88
Cytoplasmic	501	530	0.89
Transmembrane Helix	531	552	0.87
Non-Cytoplasmic	553	564	0.79
Transmembrane Helix	565	589	0.88
Cytoplasmic	590	599	0.77
Transmembrane Helix	600	621	0.90
Non-Cytoplasmic	622	635	0.84
Transmembrane Helix	636	661	0.86
Cytoplasmic	662	672	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGVWLLIY CYATLTKGFS LPGLSPTTYH SGDEIPLLVN RLTPSIYFQH QDEEGNDVSG  60
   61 DKEHFLYSYD YYNKRFHFCR PEHVEKQPES LGSVIFGDRI YNSPFQLNML EEKECVALCK 120
  121 STIPGKDAKF INTLIKSGFF QNWLVDGLPA ARKAYDSRTK TNYYGTGFEL GFTDVKQTVD 180
  181 GKAVPSTMEE LTSEASNEDV ILDARLPKNV KPNLVKTVEL PYFVNHFDIE VEFHDRGNDN 240
  241 YRVVGVIVNP VSIERSSPGA CSTTGKPLIL DEDKDNEVYF TYSVKFVASD TVWATRWDKY 300
  301 LHIYDPQIQW FSLINFSVIV ILLSSVVMHS LLRALKSDLA RYNELNLDNE FHEDSGWKLG 360
  361 HGDVFRTPSK SMLLSILVGS GMQLFLMVMC SIFFAAVGLV SPVSRGSLPT VMFVLYALFG 420
  421 FVGSYASMGV YKFFRGPYWK ANMILTPILL PGAIFLLIVI MNFFLLFAHS SGVIPARSLF 480
  481 FIILLWFLVS VPLSFAGSIV AHKQCNWDEH PTKTNQIARQ IPYQPWYLRT AQATLIAGIF 540
  541 SFGSIAVELY FIYSSLWFNK IFYMFGFLLF SFLLLTLTTS LVTILITYYS LCLENWLWQW 600
  601 RSFIIGGLGC SIYTFIHSIL FTKFKLGGVI TVVLYLGYSL IISALCCVVT GAIGFFSSMF 660
  661 FIRKIYSAIK VE