YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190405213
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFKRFVNLL VFLFLLGAGL LTFFLILSGG RESGTLKNFY WLQADTNGFN SAPSTTRWYN  60
   61 YNWCGYEDGQ LANCSSRAPA KPFSPRDNFG NSVNLPSSFR NNRDTYYYLS RVGWAMLLIS 120
  121 LFFIVLALVP GFLATFLPFK AVPVLYCVLS WLAFFFIILA ACLYTGCYVK ARKTFRNSGR 180
  181 SARLGPKNFA FIWTSVFLML VNAIWSTIFS ATHKAHSTYS DHDMYAQYES PSVDTGAQME 240
  241 KSTYNSGATD GAGPITAAPV VGQPQPTTTT TPAGNGKFFQ KLKTRKQVPS AELEPAGDGG 300
  301 LAGPVTVRD

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.87
Transmembrane Helix	7	28	0.92
Cytoplasmic	29	111	0.91
Transmembrane Helix	112	134	0.88
Non-Cytoplasmic	135	146	0.69
Transmembrane Helix	147	168	0.94
Cytoplasmic	169	188	0.88
Transmembrane Helix	189	209	0.95
Non-Cytoplasmic	210	309	0.93