YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UGA4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.97
Transmembrane Helix	77	98	0.90
Non-Cytoplasmic	99	107	0.71
Transmembrane Helix	108	127	0.87
Cytoplasmic	128	153	0.77
Transmembrane Helix	154	178	0.82
Non-Cytoplasmic	179	200	0.93
Transmembrane Helix	201	223	0.91
Cytoplasmic	224	230	0.76
Transmembrane Helix	231	249	0.95
Non-Cytoplasmic	250	275	0.88
Transmembrane Helix	276	297	0.87
Cytoplasmic	298	311	0.91
Transmembrane Helix	312	336	0.87
Non-Cytoplasmic	337	364	0.96
Transmembrane Helix	365	387	0.90
Cytoplasmic	388	412	0.92
Transmembrane Helix	413	436	0.91
Non-Cytoplasmic	437	442	0.86
Transmembrane Helix	443	464	0.86
Cytoplasmic	465	480	0.84
Transmembrane Helix	481	503	0.88
Non-Cytoplasmic	504	513	0.78
Transmembrane Helix	514	535	0.87
Cytoplasmic	536	571	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSSKNENK ISVEQRISTD IGQAYQLQGL GSNLRSIRSK TGAGEVNYID AAKSVNDNQL  60
   61 LAEIGYKQEL KRQFSTLQVF GIAFSIMGLL PSIASVMGGG LGGGPATLVW GWFVAAFFIL 120
  121 LVGITMAEHA SSIPTAGGLY YWTYYYAPEG YKEIISFIIG CSNSLALAAG VCSIDYGLAE 180
  181 EIAAAVTLTK DGNFEVTSGK LYGIFAGAVV VMCICTCVAS GAIARLQTLS IFANLFIIVL 240
  241 LFIALPIGTK HRMGGFNDGD FIFGKYENLS DWNNGWQFCL AGFMPAVWTI GSFDSCVHQS 300
  301 EEAKDAKKSV PIGIISSIAV CWILGWLIII CLMACINPDI DSVLDSKYGF ALAQIIYDSL 360
  361 GKKWAIAFMS LIAFCQFLMG ASITTAVSRQ VWAFSRDNGL PLSKYIKRVD SKYSVPFFAI 420
  421 LAACVGSLIL GLLCLIDDAA TDALFSLAVA GNNLAWSTPT VFRLTSGRDL FRPGPFYLGK 480
  481 IWSPIVAWTG VAFQLFIIIL VMFPSQQHGI TKSTMNYACV IGPGIWILAG IYYKVYKKKY 540
  541 YHGPATNLSD DDYTEAVGAD VIDTIMSKQE P