YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDL180W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLNHAASY FMPIFCSTRP HIVILSALFS ISLFSLFYAS SELLLHQYDD PLMFKPNSQD  60
   61 YFRTFLLGLF SPFLYYFLKT FLFNINQRFL ILNLIVDFPI NDVFMLLILI GLAYPQVQDH 120
  121 EGGTIKHKEC SWHIIPRQAY IFGISWALGE FTICIIGNLF NYQEIADPNI NSGFTHQESA 180
  181 NTYCNNNDMS HNDDCGCSTE YRPNVVDRSD ITLSKCIEVR NDSSSISNNV YSSEYHPIKP 240
  241 LRSSSSTYGS IRQQPHENKK QLHVPDNSQD DTIIMMNPID NSLKLTTLDT GDLSFPIDEE 300
  301 QPILKKSFGY TWAVPNENTQ NTTKSFTPIK RFIAFSTAYQ LVTGLLLMIL VVGSNIMLTI 360
  361 GESLILSMYF VYVRGHEGLF TPVVNYFGSR TISNFILCVI IPFISLNFLI NTSIYLRREL 420
  421 DDWFNNSQGE FEDDDENTIS KRVATNQEYQ HPLSANYISM DSPDVINSSP GHFGMNSGQL 480
  481 LGNTTLYYGS LNGDDDDMTN DSALLRFCKK LVKNWRALAR NDSFVLGVMV SWSLLVFVTG 540
  541 ILSTVYI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	40	0.96
Non-Cytoplasmic	41	60	0.93
Transmembrane Helix	61	82	0.89
Cytoplasmic	83	89	0.88
Transmembrane Helix	90	113	0.87
Non-Cytoplasmic	114	140	0.90
Transmembrane Helix	141	162	0.90
Cytoplasmic	163	338	0.99
Transmembrane Helix	339	361	0.88
Non-Cytoplasmic	362	390	0.85
Transmembrane Helix	391	410	0.94
Cytoplasmic	411	522	0.98
Transmembrane Helix	523	545	0.90
Non-Cytoplasmic	546	547	0.87