YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RGT2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.98
Transmembrane Helix	97	115	0.94
Non-Cytoplasmic	116	144	0.85
Transmembrane Helix	145	166	0.92
Cytoplasmic	167	174	0.87
Transmembrane Helix	175	194	0.92
Non-Cytoplasmic	195	199	0.71
Transmembrane Helix	200	221	0.91
Cytoplasmic	222	233	0.82
Transmembrane Helix	234	255	0.86
Non-Cytoplasmic	256	268	0.80
Transmembrane Helix	269	286	0.91
Cytoplasmic	287	354	0.96
Transmembrane Helix	355	378	0.86
Non-Cytoplasmic	379	392	0.87
Transmembrane Helix	393	414	0.91
Cytoplasmic	415	421	0.90
Transmembrane Helix	422	442	0.96
Non-Cytoplasmic	443	452	0.82
Transmembrane Helix	453	476	0.92
Cytoplasmic	477	488	0.88
Transmembrane Helix	489	512	0.82
Non-Cytoplasmic	513	524	0.84
Transmembrane Helix	525	545	0.95
Cytoplasmic	546	763	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDSQNCLRQ REENSHLNPG NDFGHHQGAE CTINHNNMPH RNAYTESTND TEAKSIVMCD  60
   61 DPNAYQISYT NNEPAGDGAI ETTSILLSQP LPLRSNVMSV LVGIFVAVGG FLFGYDTGLI 120
  121 NSITDMPYVK TYIAPNHSYF TTSQIAILVS FLSLGTFFGA LIAPYISDSY GRKPTIMFST 180
  181 AVIFSIGNSL QVASGGLVLL IVGRVISGIG IGIISAVVPL YQAEAAQKNL RGAIISSYQW 240
  241 AITIGLLVSS AVSQGTHSKN GPSSYRIPIG LQYVWSSILA VGMIFLPESP RYYVLKDELN 300
  301 KAAKSLSFLR GLPIEDPRLL EELVEIKATY DYEASFGPST LLDCFKTSEN RPKQILRIFT 360
  361 GIAIQAFQQA SGINFIFYYG VNFFNNTGVD NSYLVSFISY AVNVAFSIPG MYLVDRIGRR 420
  421 PVLLAGGVIM AIANLVIAIV GVSEGKTVVA SKIMIAFICL FIAAFSATWG GVVWVVSAEL 480
  481 YPLGVRSKCT AICAAANWLV NFTCALITPY IVDVGSHTSS MGPKIFFIWG GLNVVAVIVV 540
  541 YFAVYETRGL TLEEIDELFR KAPNSVISSK WNKKIRKRCL AFPISQQIEM KTNIKNAGKL 600
  601 DNNNSPIVQD DSHNIIDVDG FLENQIQSND HMIAADKGSG SLVNIIDTAP LTSTEFKPVE 660
  661 HPPVNYVDLG NGLGLNTYNR GPPSIISDST DEFYEENDSS YYNNNTERNG ANSVNTYMAQ 720
  721 LINSSSTTSN DTSFSPSHNS NARTSSNWTS DLASKHSQYT SPQ