YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCH1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.94
Transmembrane Helix	30	51	0.92
Non-Cytoplasmic	52	63	0.81
Transmembrane Helix	64	85	0.83
Cytoplasmic	86	93	0.73
Transmembrane Helix	94	114	0.92
Non-Cytoplasmic	115	129	0.93
Transmembrane Helix	130	152	0.90
Cytoplasmic	153	163	0.79
Transmembrane Helix	164	187	0.85
Non-Cytoplasmic	188	212	0.91
Transmembrane Helix	213	236	0.89
Cytoplasmic	237	279	0.96
Transmembrane Helix	280	300	0.92
Non-Cytoplasmic	301	320	0.85
Transmembrane Helix	321	343	0.83
Cytoplasmic	344	351	0.76
Transmembrane Helix	352	369	0.97
Non-Cytoplasmic	370	383	0.75
Transmembrane Helix	384	406	0.87
Cytoplasmic	407	413	0.83
Transmembrane Helix	414	436	0.93
Non-Cytoplasmic	437	455	0.96
Transmembrane Helix	456	477	0.92
Cytoplasmic	478	486	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSKVEHYL SYHTRLLLPH VLSLQSSHRV AYIFSLLSAV STGFITLISL YSQPWQKHLN  60
   61 YSSWQINTIA SMTNLGMYLT PPILGMIADS HGPITLSLLA IIGFIPSYSY LAYVFNHPEL 120
  121 SLGGNGDSSF NLSIICFVFI GISTSALYFS ALLTCTKLYP HTKLLSISLP TTCYGISSVV 180
  181 GSQLLRIKWF WSSNASSSSS NSDLNLGRVF QTFALVYVVI GLLAWIATSV VSLLHFNEEQ 240
  241 DNQKRLDDQT DVEQSPLLER SNHVQEKFTQ TMLRIFSDPV TYILAVSILL SLGPLEMFIA 300
  301 NMGSLTNLLV QLDAPTLSTK LLSTYALSST FTRLLTGIVA DFFAKKKISI KWILLTFLSL 360
  361 GVCAQLFLLK MTSSASPWGL VPTGSLVGIV YGGLFTVYPT LVLLVWGERS FGTVYGSLLI 420
  421 APAIGSMIFC MLYAKFYDSR CMSGGGDLRN PSCISAVYKY SSIAFVVSAV LSAVVFWKLK 480
  481 SRKLRI