YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RMD1
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDSNDDQPE RHALLHNDIQ TSNNSRPSLV QKKYLPTPQD TRKSRASYTG SAMINPTSKQ  60
   61 SRTGSGAQRT SRTAQKLKLL PEEPFQRDSE RLTDLKNQEV YSQVNRIKDK PARRDAEKLG 120
  121 KAHRHLLPRS TAYCTASSYN MKELVRWLKD CRKLHHTHPK LFDECLYTPF IYNDWRGDKR 180
  181 FEDEDVIRLD DEGGEIIVSD KHPDLFIFEY GVVVMWGFTE REEKAFLNDI EKFEKEKLAE 240
  241 EDIQVEEFNY YVTKSYQPRI YNDFITLRDG SNYMVKLSIS HAIAQSVKIS LFEELVDNTI 300
  301 EDTQDIPQEI AYSGKVSMSK EDIMKSIGEL FILRININLH GSVLDSPEIM WSEPQLEPIY 360
  361 QATRGYLEIN QRVSLLNQRL EVISDLLQML KEQLGHSHEE YLEFIVILLV GVEVLISVIN 420
  421 IVVDMLASQH

Type	Start	End	Confidence
Non-Cytoplasmic	1	403	0.86
Transmembrane Helix	404	423	0.72
Cytoplasmic	424	430	0.48