YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GIT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	62	0.79
Non-Cytoplasmic	63	88	0.81
Transmembrane Helix	89	108	0.89
Cytoplasmic	109	115	0.71
Transmembrane Helix	116	139	0.87
Non-Cytoplasmic	140	186	0.68
Transmembrane Helix	187	210	0.84
Cytoplasmic	211	217	0.68
Transmembrane Helix	218	237	0.91
Non-Cytoplasmic	238	275	0.65
Transmembrane Helix	276	298	0.71
Cytoplasmic	299	306	0.67
Transmembrane Helix	307	329	0.87
Non-Cytoplasmic	330	335	0.64
Transmembrane Helix	336	356	0.93
Cytoplasmic	357	364	0.57
Transmembrane Helix	365	387	0.81
Non-Cytoplasmic	388	398	0.56
Transmembrane Helix	399	420	0.65
Cytoplasmic	421	428	0.57
Transmembrane Helix	429	451	0.91
Non-Cytoplasmic	452	518	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDKDITSVN EKEVNENTNP RIIKYDAERR ATRTETSKKD KWKNIVTIIA SGFALISDGY  60
   61 VNGSMSMLNK VFVMEYGKKN YSSKVSTRVS NAALVGIIFG QFFMGIAADY YSRKSCILVA 120
  121 TAILVIGSAL CAASHGTTVP GMFWMLTVMR GLVGIGVGAE YPTSTLSANE SANEYTTTKR 180
  181 GGILVMVTNL PLAFGGPFAT IIFLIVYKIC SGTKHLEAIW RTVFAIGCFW PLSVFYFRWK 240
  241 TATTEVYEKG RIKRNIPYFL ALKFYWKRLL GTCGTWFMYD FVTFPNGIFS STIISSVIKD 300
  301 QNDLVKVAEW NLLLGVLAVL GVPIGAYLSD RIGRKYTLMF GFSGYIIFGL IIGCAYDQLK 360
  361 KITPLFIIFY AFMNMLGNAG PGDMLGVISS EASATAVRGV FYGLSAVTGK IGSVVGVECF 420
  421 QPIRDNLGAR WTFIIAAICG LIGIIITYFF VPHSLESDLM KQDVEFHNYL VSNGWTGKMG 480
  481 FDETDEESMV RTIEVEENGT NCSKKNAEII SVRQVDQS