YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDC50
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLFKRGKA PPLTKEGPTS KKPPNTAFRQ QRLKAWQPIL SPQSVLPLLI FVACIFTPIG  60
   61 IGLIVSATKV QDLTIDYSHC DTKASTTAFE DIPKKYIKYH FKSKVENKPQ WRLTENENGE 120
  121 QSCELQFEIP NDIKKSIFIY YKITNFYQNH RRYVQSFDTK QILGEPIKKD DLDTSCSPIR 180
  181 SREDKIIYPC GLIANSMFND TFSQVLSGID DTEDYNLTNK HISWSIDRHR FKTTKYNASD 240
  241 IVPPPNWMKK YPDGYTDENL PDIHTWEEFQ VWMRTAAFPK FYKLTLKNES ASLPKGKYQM 300
  301 NIELNYPISL FGGTKSFVLT TNGAIGGRNM SLGVLYLIVA GLCALFGIIF LVKLIFQPRA 360
  361 MGDHTYLNFD DEENEDYEDV HAENTTLREI L

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.58
Transmembrane Helix	45	65	0.87
Cytoplasmic	66	305	0.59
Transmembrane Helix	306	325	0.38
Non-Cytoplasmic	326	331	0.66
Transmembrane Helix	332	356	0.86
Cytoplasmic	357	391	0.74