YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCR061W
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	100	0.99
Transmembrane Helix	101	123	0.88
Cytoplasmic	124	129	0.86
Transmembrane Helix	130	152	0.90
Non-Cytoplasmic	153	168	0.85
Transmembrane Helix	169	191	0.88
Cytoplasmic	192	314	0.96
Transmembrane Helix	315	347	0.65
Non-Cytoplasmic	348	356	0.67
Transmembrane Helix	357	379	0.80
Cytoplasmic	380	403	0.74
Transmembrane Helix	404	428	0.73
Non-Cytoplasmic	429	448	0.86
Transmembrane Helix	449	470	0.89
Cytoplasmic	471	488	0.86
Transmembrane Helix	489	511	0.83
Non-Cytoplasmic	512	530	0.83
Transmembrane Helix	531	550	0.94
Cytoplasmic	551	560	0.77
Transmembrane Helix	561	578	0.93
Non-Cytoplasmic	579	596	0.82
Transmembrane Helix	597	619	0.89
Cytoplasmic	620	631	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFVSILSL FGCAATLVTA HDDMDMDMDM DMDMDMNIDT TTSQSIDVSS TASIVPVPHE  60
   61 PKHLHGLPIL QSPSLTPAER LYWENYNTTT YFTTQAGNRS ALRYHIITLL LVAFVLYPVS 120
  121 LALSAARSRW YLPLLFVNLC ICISSVMALS VFKNTFPEED WYAHNIYGTT SVLLLVFMLV 180
  181 HFFAAVLSVP VSLASKKEYR PVDTIPLNDL ESTPVMVNSA RGSPSPSSNR DTLFSLSSDT 240
  241 TTATATNNNK RRRAEGEDEG DNTSNHDTLR DEDYDNDDDE IASIEAPPLL PQDIPVFRIL 300
  301 FTNTKYQMLA AHLSCVANVV FHMLTYPLFM YIFVDLIIGF AVGNLLGKGI RIFNLLAHWI 360
  361 KGGVFFTLGV VSLARYCGFA AKYGWAWNNI SFTSQLTQTR SSNLLFRFAP AGTFTMEFVE 420
  421 SFLIFFYGST NIFLEHLAGN GGAWTAKDLQ HVSIAFMFIG TGLCGLLTEY KLNHWRFEHA 480
  481 RKRPQTDVVA ATPGYSPNPF PAFTIFWTGI LMSQHAQSSQ FSTTIHTQWG YLLSYGSFFR 540
  541 LLTFLILFLV PNTNSAASKP FTELITSFCL LCGGLVFMES TDQSIEAMEY RGFTPMFTFN 600
  601 LSVGFVSLLM AWEMILFIWK DWLIKTRKTS L