YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARE1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	187	0.96
Transmembrane Helix	188	210	0.85
Non-Cytoplasmic	211	231	0.88
Transmembrane Helix	232	253	0.94
Cytoplasmic	254	261	0.88
Transmembrane Helix	262	284	0.90
Non-Cytoplasmic	285	295	0.72
Transmembrane Helix	296	313	0.68
Cytoplasmic	314	401	0.73
Transmembrane Helix	402	424	0.87
Non-Cytoplasmic	425	449	0.90
Transmembrane Helix	450	473	0.81
Cytoplasmic	474	534	0.86
Transmembrane Helix	535	555	0.82
Non-Cytoplasmic	556	561	0.61
Transmembrane Helix	562	581	0.68
Cytoplasmic	582	587	0.74
Transmembrane Helix	588	608	0.91
Non-Cytoplasmic	609	610	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETKDLLQD EEFLKIRRLN SAEANKRHSV TYDNVILPQE SMEVSPRSST TSLVEPVEST  60
   61 EGVESTEAER VAGKQEQEEE YPVDAHMQKY LSHLKSKSRS RFHRKDASKY VSFFGDVSFD 120
  121 PRPTLLDSAI NVPFQTTFKG PVLEKQLKNL QLTKTKTKAT VKTTVKTTEK TDKADAPPGE 180
  181 KLESNFSGIY VFAWMFLGWI AIRCCTDYYA SYGSAWNKLE IVQYMTTDLF TIAMLDLAMF 240
  241 LCTFFVVFVH WLVKKRIINW KWTGFVAVSI FELAFIPVTF PIYVYYFDFN WVTRIFLFLH 300
  301 SVVFVMKSHS FAFYNGYLWD IKQELEYSSK QLQKYKESLS PETREILQKS CDFCLFELNY 360
  361 QTKDNDFPNN ISCSNFFMFC LFPVLVYQIN YPRTSRIRWR YVLEKVCAII GTIFLMMVTA 420
  421 QFFMHPVAMR CIQFHNTPTF GGWIPATQEW FHLLFDMIPG FTVLYMLTFY MIWDALLNCV 480
  481 AELTRFADRY FYGDWWNCVS FEEFSRIWNV PVHKFLLRHV YHSSMGALHL SKSQATLFTF 540
  541 FLSAVFHEMA MFAIFRRVRG YLFMFQLSQF VWTALSNTKF LRARPQLSNV VFSFGVCSGP 600
  601 SIIMTLYLTL