YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCR023C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.92
Transmembrane Helix	17	38	0.84
Non-Cytoplasmic	39	59	0.83
Transmembrane Helix	60	80	0.88
Cytoplasmic	81	89	0.86
Transmembrane Helix	90	108	0.97
Non-Cytoplasmic	109	114	0.82
Transmembrane Helix	115	137	0.90
Cytoplasmic	138	153	0.81
Transmembrane Helix	154	173	0.91
Non-Cytoplasmic	174	197	0.88
Transmembrane Helix	198	220	0.90
Cytoplasmic	221	353	0.98
Transmembrane Helix	354	371	0.93
Non-Cytoplasmic	372	412	0.94
Transmembrane Helix	413	434	0.93
Cytoplasmic	435	445	0.78
Transmembrane Helix	446	464	0.92
Non-Cytoplasmic	465	474	0.80
Transmembrane Helix	475	499	0.81
Cytoplasmic	500	510	0.81
Transmembrane Helix	511	534	0.83
Non-Cytoplasmic	535	543	0.86
Transmembrane Helix	544	563	0.88
Cytoplasmic	564	611	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQKLTFKE QMDGFPWVQL VVVSLVRFSE PIAFSSLFPY VYFMVRDFNI APNDAQVSKY  60
   61 SGYLSSSFAL CQVISAYHWG RFSEKHGRKI TLTCGLIGTS VSLLILGFSR NFYQALVARS 120
  121 LMGLLNGNVG VIRTIIGEIA TERKHQALAF STMPLLFQFG AVVGPMIGGF LVFRDGTMNE 180
  181 VPLWFPHFAK RIIRSYPYAL PNVVVCMFLM FGLTNATLFL EETHPAFKDR RDYGLEVGDF 240
  241 IKKNIFGIQP KRRPWQKRIQ DDSENIHHRN ENVNSIRGQD SEEDENSPLV NTTNDDDTES 300
  301 IQSIDPILTR RQSVGLIRTY SLHEPTDAVH ANIDTAPDGC KESSIFHHVF HTKVFYPISV 360
  361 NFIMALHLIV YNEFLPVFLA YDLAVDPENP KKLASKFPWK ISGGIGYEPE QTGTLLSTTG 420
  421 IFGCFVVIFI FPIVDRNFDC LTIFRTLVKL YPIMYVMVPY VVFLQNERIP SWYTVVYLYI 480
  481 ITGIKTFCGA LTSPQIMLLI HNSSPLSCRS VINGATISIS ASARFIGPLV WGYIMSWSQQ 540
  541 NDVAWVSWWS LSLFCMVALY QSYKIAPIDD NENELHGQGS EDAYNSQSQS SDLRMAHRSS 600
  601 LSSLSNQRCT T