YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190406442
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPHLDNNSN NDDVKLDTLG EQNVLSSAEN ITLPEDTFKS YMTYLLYEMA HYKPMIFSFL  60
   61 ALSVSILIVV IFHNVKACDV VFGFSIFVTS ILFLSTLIPF NVYISDEGFR IKLLLEVITH 120
  121 RPAVKGKEWR AITDNMNQYL LDNGLWSTRY YFYSSERCYK FFRFLVKEKP PGVNVNSSVK 180
  181 DATSTQIDAP ANEASNEVIK CFSFSSDPIF EAYFVKAVEV EKQAQQEYWR KQYPDADIP

Type	Start	End	Confidence
Cytoplasmic	1	54	0.87
Transmembrane Helix	55	73	0.96
Non-Cytoplasmic	74	80	0.70
Transmembrane Helix	81	104	0.91
Cytoplasmic	105	239	0.89