YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCL073C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.98
Transmembrane Helix	58	79	0.86
Non-Cytoplasmic	80	95	0.86
Transmembrane Helix	96	115	0.90
Cytoplasmic	116	124	0.80
Transmembrane Helix	125	145	0.89
Non-Cytoplasmic	146	151	0.77
Transmembrane Helix	152	173	0.87
Cytoplasmic	174	186	0.78
Transmembrane Helix	187	207	0.89
Non-Cytoplasmic	208	216	0.85
Transmembrane Helix	217	238	0.92
Cytoplasmic	239	273	0.89
Transmembrane Helix	274	296	0.87
Non-Cytoplasmic	297	305	0.86
Transmembrane Helix	306	325	0.94
Cytoplasmic	326	344	0.89
Transmembrane Helix	345	367	0.88
Non-Cytoplasmic	368	381	0.86
Transmembrane Helix	382	403	0.87
Cytoplasmic	404	410	0.85
Transmembrane Helix	411	430	0.94
Non-Cytoplasmic	431	439	0.84
Transmembrane Helix	440	462	0.93
Cytoplasmic	463	478	0.84
Transmembrane Helix	479	498	0.87
Non-Cytoplasmic	499	547	0.86
Transmembrane Helix	548	568	0.87
Cytoplasmic	569	615	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSVVGASS NKKSGIRQSC EIIERERHSN DDTYSMTSTF FKLKENEIMS AQFDSLKYKI  60
   61 LLISTAFVCG FGISLDYTLR STYTGYATNS YSEHSLLSTV QVINAVVSVG SQVVYSRLSD 120
  121 HFGRLRLFLV ATIFYIMGTI IQSQATRLTM YAAGSVFYNC GYVGTNLLLT LILSDFSSLK 180
  181 WRMFYQYASY WPYIIIPWIS GNIITAANPQ KNWSWNIAMW AFIYPLSALP IIFLILYMKY 240
  241 KSSKTAEWRS LKEQARKERT GGLFENLVFL FWKLDIVGIL LITVSLGCIL VPLTLANETS 300
  301 QKWHNSKIIA TLVSGGCLFF IFLYWEAKFA KSPLLPFKLL SDRGIWAPLG VTFFNFFTFF 360
  361 ISCDYLYPVL LVSMKESSTS AARIVNLPDF VAATASPFYS LLVAKTRKLK LSVIGGCAAW 420
  421 MVCMGLFYKY RGGSGSHEGV IAASVIMGLS GLLCSNSVIV ILQAMTTHSR MAVITGIQYT 480
  481 FSKLGAAIGA SVSGAIWTQT MPNQLYKNLG NDTLAEIAYA SPYTFISDYP WGSPERDAVV 540
  541 ESYRYVQRII MTVGLACTVP FFAFTMFMRD PELIDKATHE EFTEDGLVVL PDEENIFSQI 600
  601 KALFRHNRSN KKLGC