YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MGR1
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVFTPPSGN SNSTDHTHTQ DDHDKDDNDI KKFYIRPSLG LKLWGPLVPA PDNLPGLYTL  60
   61 ITIQSAVGFF ALWRLRRLYK LPPPRRIATG THSDLSFGEL PSEMIVNGKT KIKKDIADFP 120
  121 TLNRFSTTHG DIVLAPPPII PRQSRFVSVR KLLWGLFGSL LLSQSLLELT RLNFLKYDPW 180
  181 CDEMKSVRDK KFFNNIVKYY HEGIDPTKIK VKDAMNGTPL STNIPEVKQS VALARAQVEA 240
  241 QNPIIKWFGP LEYKPMSFNE YLNRMEFHLD MFEFFQNKRN IRENSIELIN SISHNPQSSS 300
  301 TGLEGLSESK KLHLQNVEKR LHFLASSGDS ISAPVKKRSS TTLSRGVILP HDTKGPQDID 360
  361 LDTIRSLYDP WMTLALETSL SIKFIPTTMP SHTKTPTSTD QPLPGPTPKA LTNEKTH

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.91
Transmembrane Helix	54	75	0.81
Cytoplasmic	76	148	0.86
Transmembrane Helix	149	167	0.69
Non-Cytoplasmic	168	417	0.88