YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VBA2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.66
Transmembrane Helix	34	55	0.89
Non-Cytoplasmic	56	62	0.65
Transmembrane Helix	63	84	0.86
Cytoplasmic	85	93	0.88
Transmembrane Helix	94	115	0.90
Non-Cytoplasmic	116	122	0.70
Transmembrane Helix	123	142	0.94
Cytoplasmic	143	162	0.95
Transmembrane Helix	163	185	0.88
Non-Cytoplasmic	186	195	0.80
Transmembrane Helix	196	217	0.93
Cytoplasmic	218	236	0.89
Transmembrane Helix	237	257	0.94
Non-Cytoplasmic	258	273	0.89
Transmembrane Helix	274	294	0.90
Cytoplasmic	295	303	0.76
Transmembrane Helix	304	323	0.96
Non-Cytoplasmic	324	333	0.82
Transmembrane Helix	334	358	0.85
Cytoplasmic	359	369	0.92
Transmembrane Helix	370	394	0.84
Non-Cytoplasmic	395	445	0.96
Transmembrane Helix	446	467	0.79
Cytoplasmic	468	474	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISNWITTA YLITSTSFQP LYGSFSDALG RRNCLFFANG AFTIGCLACG FSKNIYMLSF  60
   61 MRALTGIGGG GLITLSTIVN SDVIPSSKRG IFQAFQNLLL GFGAICGASF GGTIASSIGW 120
  121 RWCFLIQVPI SVISSILMNY YVPNQKEYNR QNSSIFQNPG KILRDIDVMG SILIITGLTL 180
  181 QLLYLSLGCS TSKLSWTSPS VLLLLVGSVI ILLLFILHER KTSARAIIPM ELVNSSYSVV 240
  241 VLSISILVGF ASYAYLFTLP LFFQIVLGDS TAKAGLRLTI PSLFTPVGSL ITGFSMSKYN 300
  301 CLRLLLYIGI SLMFLGNFLF LFIEKTSPNW LIGLFLIPAN LGQGITFPTT LFTFIFMFSK 360
  361 SDQATATSTL YLFRSIGSVW GVAISAGVIQ LSFAGLLRSN LKGLLDENKI KKLIVQLSAN 420
  421 SSYIGSLHGE VKNTVIKSFD EATKRAHLMS TLLSSLALIL CILKDNLAKP KTRR