YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BSD2
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEQELLIGQ EMNTLHAGSS TDGINVGNAG RTRDTQTGVE GETEIGSDEE DSIEDEGSSS  60
   61 GGNSTTERLV PHQLREQAAR HIGKIGRHFN ILDRLFKKRT QQSSDIQQGA MFDGVFSNLS 120
  121 AKPDTTETEG NNEQDIPPTY DEAAADMAPS YYGMDLNNSD IYYDEICIEG LPVGNIANLL 180
  181 WNIIVSTSFQ FIGFLITYIL HTSHAAKQGS RFGLGLTFIG YGYSMIPNDV TSKVGKNKSL 240
  241 NRMELEDPNE FDDVRLNSQS TTQDKFESHL NHGLDEEKQN IPWLAVFVAF LGLFITLKSI 300
  301 YDYIQVKKLE KKYLNQSQNQ A

Type	Start	End	Confidence
Cytoplasmic	1	178	0.56
Transmembrane Helix	179	200	0.76
Non-Cytoplasmic	201	280	0.76
Transmembrane Helix	281	301	0.82
Cytoplasmic	302	321	0.80