YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBR220C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	42	0.86
Non-Cytoplasmic	43	50	0.82
Transmembrane Helix	51	71	0.85
Cytoplasmic	72	89	0.87
Transmembrane Helix	90	113	0.88
Non-Cytoplasmic	114	136	0.96
Transmembrane Helix	137	160	0.87
Cytoplasmic	161	170	0.84
Transmembrane Helix	171	193	0.84
Non-Cytoplasmic	194	215	0.86
Transmembrane Helix	216	236	0.92
Cytoplasmic	237	374	0.93
Transmembrane Helix	375	400	0.67
Non-Cytoplasmic	401	423	0.63
Transmembrane Helix	424	445	0.79
Cytoplasmic	446	453	0.63
Transmembrane Helix	454	476	0.72
Non-Cytoplasmic	477	521	0.83
Transmembrane Helix	522	542	0.94
Cytoplasmic	543	560	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPKRKSGSL AKHDLPQFYL LIMLYLAQGI PVGLAFGTVP FLLKSLAKET SFTSLGIFSM  60
   61 ATYPYSLKII WSPIVDSLYN KRIGRRRSWI IPVQFVSGFV LWALGWCISQ GIIFDGVDDA 120
  121 FHNRGNGTLH SVSIKNLTWW FGLLVFLCAT QDIAVDGWAL TILSKESLSY ASTAQTIGLN 180
  181 IGYFMSFTIF LSLNSSDFAN KYFRNIPLDH GFISLGGYMK FSGMLYIVIT IYIIFCTKEK 240
  241 PYVEYLPKVE PINTSDGGSK PISIEYDDGD VVSTQNTSSI KYIYRCFIKV LKLKSVRSLA 300
  301 FIHMISKFAF QCNEAATNLK LLEQGFKRED LAVTVLIDLP FEIIFGYYVV KWSSDKDPMI 360
  361 RDNRRLRNST GTNKVIKFLV GDAGVLTPWL WGFLGRLAAA VLGSYVVKQF PKDGEISTGY 420
  421 FCLVIFQHLL GSFMNTVQFI GISAFHTRVA DPVLGGTYMT LLNTLSNFGG TWPRLIIMSM 480
  481 INYFTVYQCT IPGTNKVYVT HGGSMQACTE LLNGTVTILR DGYYITNLIC IVVGLFLYFG 540
  541 YLKRKILHLQ SLPISSWRCT