YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TAT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.99
Transmembrane Helix	99	120	0.89
Non-Cytoplasmic	121	128	0.73
Transmembrane Helix	129	154	0.79
Cytoplasmic	155	165	0.80
Transmembrane Helix	166	187	0.85
Non-Cytoplasmic	188	204	0.81
Transmembrane Helix	205	226	0.89
Cytoplasmic	227	238	0.78
Transmembrane Helix	239	259	0.91
Non-Cytoplasmic	260	278	0.89
Transmembrane Helix	279	302	0.89
Cytoplasmic	303	320	0.95
Transmembrane Helix	321	342	0.93
Non-Cytoplasmic	343	374	0.90
Transmembrane Helix	375	394	0.87
Cytoplasmic	395	421	0.87
Transmembrane Helix	422	441	0.94
Non-Cytoplasmic	442	447	0.86
Transmembrane Helix	448	473	0.85
Cytoplasmic	474	493	0.95
Transmembrane Helix	494	516	0.93
Non-Cytoplasmic	517	530	0.87
Transmembrane Helix	531	552	0.86
Cytoplasmic	553	619	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDSVSFIAK EASPAQYSHS LHERTHSEKQ KRDFTITEKQ DEVSGQTAEP RRTDSKSILQ  60
   61 RKCKEFFDSF KRQLPPDRNS ELESQEKNNL TKSIKSRHLV MISLGTGIGT GLLVGNGQVL 120
  121 GTAGPAGLVL GYGIASIMLY CIIQAAGELG LCYAGLTGNY TRYPSILVDP SLGFAVSVVY 180
  181 TIQWLTVLPL QLVTAAMTVK YWTSVNADIF VAVVFVFVII INLFGSRGYA EAEFIFNSCK 240
  241 ILMVIGFVIL AIIINCGGAG DRRYIGAEYW HNPGPFAHGF KGVCTVFCYA AFSYGGIEVL 300
  301 LLSAAEQENP TKSIPNACKK VVYRILLIYM LTTILVCFLV PYNSDELLGS SDSSGSHASP 360
  361 FVIAVASHGV KVVPHFINAV ILISVISVAN SSLYSGPRLL LSLAEQGVLP KCLAYVDRNG 420
  421 RPLLCFFVSL VFGCIGFVAT SDAEEQVFTW LLAISSLSQL FIWMSMSLSH IRFRDAMAKQ 480
  481 GRSMNEVGYK AQTGYWGSWL AVLIAIFFLV CQFWVAIAPV NEHGKLNVKV FFQNYLAMPI 540
  541 VLFAYFGHKI YFKSWSFWIP AEKIDLDSHR NIFVSPSLTE IDKVDDNDDL KEYENSESSE 600
  601 NPNSSRSRKF FKRMTNFWC