YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BAP2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.99
Transmembrane Helix	99	118	0.93
Non-Cytoplasmic	119	126	0.65
Transmembrane Helix	127	147	0.82
Cytoplasmic	148	166	0.77
Transmembrane Helix	167	188	0.76
Non-Cytoplasmic	189	210	0.79
Transmembrane Helix	211	228	0.96
Cytoplasmic	229	239	0.77
Transmembrane Helix	240	263	0.85
Non-Cytoplasmic	264	289	0.89
Transmembrane Helix	290	309	0.94
Cytoplasmic	310	328	0.91
Transmembrane Helix	329	349	0.93
Non-Cytoplasmic	350	377	0.91
Transmembrane Helix	378	400	0.80
Cytoplasmic	401	427	0.88
Transmembrane Helix	428	447	0.94
Non-Cytoplasmic	448	453	0.82
Transmembrane Helix	454	477	0.89
Cytoplasmic	478	497	0.91
Transmembrane Helix	498	521	0.88
Non-Cytoplasmic	522	536	0.89
Transmembrane Helix	537	557	0.85
Cytoplasmic	558	609	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSEDFGSS GKKETSPDSI SIRSFSAGNN FQSSSSEKTY SKQKSGSDKL IHRFADSFKR  60
   61 AEGSTTRTKQ INENTSDLED GVESITSDSK LKKSMKSRHV VMMSLGTGIG TGLLVANAKG 120
  121 LHYGGPAALI IGYILVSFET YFMIQAAGEM AVTYPTLPAN FNAYSSIFIS KSFGFATVWL 180
  181 YCFQWLTVLP LELITASMTI QFGNDKINPD IYILIFYVFL VFIHFFGVKA YGETEFIFNC 240
  241 CKILMIAGFI ILSIVINCGG AGNDGYIGAT YWHNPGAFAG DTSIGRFKNV CYILVTAYFS 300
  301 FGGMELFALS VQEQSNPRKS TPVAAKRSIY RIVVIYLLTM ILIGFNVPYN DDQLMGAGGS 360
  361 ATHASPYVLA ASIHGVKIVP HIINAVILIS VVSVANSSLY AGPRLICSLA QQGYAPKFLD 420
  421 YVDREGRPLR ALIVCCVFGV IAFVAASSKE EIVFTWLAAI AGLSELFTWT SIMLSHLRFR 480
  481 QAMKVQGRSL DELGYKATTG IWGSIYGVFF NILVFVAQFW VALAPLGNGG KCDAESFFQN 540
  541 YLAFPIWLAF YFGYMVYNRD FTLLNPLDKI DLDFHRRIYD PELMRQEDEE NKEKLRNMSL 600
  601 MRKAYHFWC